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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCTTGGTGGGAAGACATTTAAAATGAAGTTTGGTCATCATGGAGGAAATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcctgacctgacttcttactgttttgatactgaatgcgattcatgttttttgactctcgagggaaatagccttccgtttgaatttcagtacaat...

Basic information

species Oryza sativa
transcript LOC_Os02g47850.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47850.3 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G147450_T03 (Zea mays), 5'ss of exon 10
AGCTCTTGGTGGGAAGACATTTAAAATGAAGTTTGGTCATCATGGAGGAAATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcctgacctgacttcttactgttttgatactgaatgcgattcatgttttttgac-----tctcgagggaaatagccttccgtttgaatttcagtacaat---
 || |||||||||||||||||||||||||| |||||||||||||| || ||||| ||||| ||||| || || ||||| ||||| |||||||||||||| ||||||||||      || ||||||| || | || ||  ||| || |||||| | || |        | |  |||| ||    ||  || ||  || || |  |    
GGCGCTTGGTGGGAAGACATTTAAAATGAAATTTGGTCATCATGGTGGGAATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAGgtttgttcct------acctcttacttttgttatgctttatgtgagtcatgtctgttaaaaacaacttaggaggaactaagtgtc--ttcgatattaagaaagaaatt

upper sequence: LOC_Os02g47850.3 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G029573_T01 (Zea mays), 5'ss of exon 9
AGCTCTTGGTGGGAAGACATTTAAAATGAAGTTTGGTCATCATGGAGGAAATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcctgacctgacttcttactgttttgatactgaatgcgattcatgttttttgac--------tctcgagggaaatagccttccgtttgaatttcagtacaat-
 ||||||||||||||||||||||||||||| ||||| |||||||| || ||||| ||||| ||||| || || ||||||||||| |||||||||||||| ||||||||||      || ||||||| |||| || ||  |||    |||||| | || |          || |  |||| ||| | ||  |||||| || ||    |  
GGCTCTTGGTGGGAAGACATTTAAAATGAAATTTGGACATCATGGCGGGAATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcct------acctcttactttttt-atgcttgatgttggtcatgtctgttaaaaaaaccaacctaggaggaactaggcatc--tttgaaattaagagagaaa

upper sequence: LOC_Os02g47850.3 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA05G32190.1 (Glycine max), 5'ss of exon 8
AGCTCTTGGTGGGAAGACATTTAAAATGAAGTTTGGTCATCATGGAGGAAATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcctgacctgacttcttactgttttgatactgaatgcgattcatgttttttgactctcgagggaaatagccttccgtttgaatttcagtacaat-----
 ||| | || || || || ||||| ||||| |||||||||||||||||||||||||||||| || ||||||||| ||| |  || || || ||||| || || |||   | |   ||||| |      ||  | ||| | |       |  |||| |     ||       |     |   || | || | ||  |   |     
GGCTTTAGGAGGCAAAACCTTTAAGATGAAATTTGGTCATCATGGAGGAAATCATCCTGTTCGTAACCTTCGAACTGGCCAGGTTGAAATTAGTGCTCAGgtatgtgattaaatggacttttc-----ttctacactaattctttgataaattttgtagtgttccttctccaccatatcttgtgtaaaatccatgaatcttttag

upper sequence: LOC_Os02g47850.3 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA06G15510.3 (Glycine max), 5'ss of exon 8
AGCTCTTGGTGGGAAGACATTTAAAATGAAGTTTGGTCATCATGGAGGAAATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcctgacctgacttctt--actgttttgatactgaatgcgattcatgttttttgactctcgagggaaatagccttccgtttgaatttcagtacaat
 ||| | || || || || || || ||||| |||||||| ||||||||||||||||||||| |  ||||||||||||| | ||| || || ||||| || || ||      |      ||||   |||  ||   |  | | ||   | |      |   |   |  |    |||    | |  | ||  |           
GGCTTTAGGAGGTAAAACCTTCAAGATGAAATTTGGTCACCATGGAGGAAATCATCCTGTTCGCAACCTTCGAAGTGGCCATGTTGAAATTAGTGCTCAGgtatgcgaactaaaaagtttctgtaacttcttatttcttaagtgttctgccataactaaaatagttaaattcaatcaagtccattatgtgtgctgaggag--

upper sequence: LOC_Os02g47850.3 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA04G39390.1 (Glycine max), 5'ss of exon 8
AGCTCTTGGTGGGAAGACATTTAAAATGAAGTTTGGTCATCATGGAGGAAATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcctgacctgacttcttactgttttgatactgaatgcgattcatgttttttgactctcgagggaaatagccttccgtttgaatttcagtacaat-
 ||| | || || || || || || ||||| |||||||| |||||||||||||| |||||| || ||||||||||||| | ||| || || ||||| || || |||     |       | | |||  ||   |  | | ||  || |      |   |   |  |    |||  |  ||| ||  |  | | |   |   
GGCTTTAGGAGGTAAAACCTTCAAGATGAAATTTGGTCACCATGGAGGAAATCACCCTGTTCGTAACCTTCGAAGTGGCCATGTTGAAATTAGTGCCCAGgtatgtgaactaaagtttctgtaacttcttatttcttaagtgttatgccataactaaaatagttaaattcaatt-cagtccattacatgtgctggggagag

upper sequence: LOC_Os02g47850.3 (Oryza sativa), 5'ss of exon 9
lower sequence: AT3G27740.1 (Arabidopsis thaliana), 5'ss of exon 8
AGCTCTTGGTGGGAAGACATTTAAAATGAAGTTTGGTCATCATGGAGGAAATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgttt--gttcctgacctgac----ttcttactgttttgatactgaatgcgattcatgttttttgactctcg-----aggg---aaatagccttccgtttgaatttcagtacaat-----------------------------------------------------------------------
|||| | || || || || || || |||||||||||||||||||||||||| || || ||| || ||    ||| ||| |  || || || ||||| || ||     | ||  |||| |     |||    |  ||  |  |  | | | |   | |  |||  |||  |      |  |     |||    || | |  ||   | || | |                                                                        
AGCTTTGGGGGGTAAAACCTTCAAGATGAAGTTTGGTCATCATGGAGGAAACCACCCAGTTCGTAACAACAGAACTGGTCAGGTGGAGATCAGTGCTCAGgtaccaatacccaacctcaaaatgttccatttaattccaagcatactaccaactaaggatttgaacttccacattcaaagttcggataattatctgataaaacgactgtgctaggaacattgttacaagcttgacaaaatctaaatatggtgtatcattgtctttttttctgtaattcttggcag

upper sequence: LOC_Os02g47850.3 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv04s0044g00550.t01 (Vitis vinifera), 5'ss of exon 8
AGCTCTTGGTGGGAAGACATTTAAAATGAAGTTTGGTCATCATGGAGGAAATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttc--ctgacctgacttcttactgtt-----ttgatactgaatgcgattcatgttttttgactctcgagggaaatagccttccgtttgaat-ttcagtacaat
 ||  | ||||| || || |||||||||||||||||||| ||||| ||||||||||| ||| || ||||||| ||||| || || || || ||||| || || |||||  ||   |     | |  || ||     |||  |    ||   |||| | |  ||| ||| ||      | |  |||     |||| | ||| ||     
GGCATTGGGTGGTAAAACCTTTAAAATGAAGTTTGGTCACCATGGTGGAAATCATCCAGTTCGTAACCTTCGGAGTGGTCGCGTTGAGATCAGTGCTCAGgtgtgttcacctagacctctgtttagctattaatgtttgcaagaacatctaattcctctaattttactttct---tcagttccctgtaaattgattcttctgt-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86423472|gb|CI062233.1|CI062233
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|218498317|gb|FG959928.1|FG959928
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTAGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|29626834|gb|CB631845.1|CB631845
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|88994375|gb|CI117329.1|CI117329
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACTA                         AACCATAATTATGCTGTTGACCCAGAGCCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|88266357|gb|CI377259.1|CI377259
EST:     TCGAAGTGGACGTGTCCACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: TCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|86513704|gb|CI156337.1|CI156337
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|88982941|gb|CI250545.1|CI250545
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|14980880|gb|BI305558.1|BI305558
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|88958138|gb|CI095657.1|CI095657
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|86514359|gb|CI156992.1|CI156992
EST:     ATCACCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|86254717|gb|CI061028.1|CI061028
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|33799804|gb|CF325768.1|CF325768
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|89192809|gb|CI050107.1|CI050107
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACATGTCGACATAAGTGCACCA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|86546604|gb|CI186810.1|CI186810
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|89176143|gb|CI043164.1|CI043164
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|87034488|gb|CI189112.1|CI189112
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACGA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|86427221|gb|CI072318.1|CI072318
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|89192818|gb|CI050116.1|CI050116
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|29682715|gb|CB678990.1|CB678990
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCC
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCC
EST: gi|38479984|gb|CF964073.1|CF964073
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|33798206|gb|CF324963.1|CF324963
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|12622631|gb|AU172844.1|AU172844
EST:     ACCTTCGAAGTGGACGTGTCGACATAAGTGCNCAA                         AACCCATAATTATGCTGTTGACCCAGAAGTCACTTCCAGAAGGGGTGAAAG
genomic: ACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAA-CCATAATTATGCTGTTGACCCAG-AGTCACTTCCAGAAGGGGTGAAAG
EST: gi|66913870|gb|CX100718.1|CX100718
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|86523690|gb|CI163896.1|CI163896
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|86425823|gb|CI070920.1|CI070920
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|86259732|gb|CI065605.1|CI065605
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|218501996|gb|FG959116.1|FG959116
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AAACATAATTATGCTGTGGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|89179079|gb|CI043584.1|CI043584
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|89195098|gb|CI051211.1|CI051211
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACCA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|89173686|gb|CI041579.1|CI041579
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|2428890|gb|C73353.1|C73353
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTNCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|89173610|gb|CI041503.1|CI041503
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|27547697|gb|CA765722.2|CA765722
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|87035241|gb|CI189863.1|CI189863
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|86598264|gb|CI354881.1|CI354881
EST:     TCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTCTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: TCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|58689196|gb|CK077883.1|CK077883
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAA
EST: gi|86426311|gb|CI071408.1|CI071408
EST:     TCGAAGTGGACGTGTCGACATAAGTGCACCA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: TCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|87033328|gb|CI187952.1|CI187952
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|87029439|gb|CI250372.1|CI250372
EST:     GTGGACGTGTCGACATAAGTGCACCA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: GTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|89176288|gb|CI043309.1|CI043309
EST:     GTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: GTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|29677260|gb|CB673535.1|CB673535
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|86509618|gb|CI152251.1|CI152251
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|88985161|gb|CI006815.1|CI006815
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACTA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|89198307|gb|CI007367.1|CI007367
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACTA                         AACCATGATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|89175497|gb|CI042518.1|CI042518
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|29658291|gb|CB654566.1|CB654566
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|86425368|gb|CI070465.1|CI070465
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|88232225|gb|CI230683.1|CI230683
EST:     GTGTCGACATAAGTGCACAA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: GTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|89185888|gb|CI047757.1|CI047757
EST:     ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACCA                         AACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
genomic: ATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTA
EST: gi|33799149|gb|CF325432.1|CF325432
EST:     TCATCCTGTTTGTGACCTTCGAAGTGGGACGTGTCGACATAAGTGCACAA                         AACCCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGT
genomic: TCATCCTGTTTGTGACCTTCGAAGT-GGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAA-CCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 75 (downstream exon)
Score: 61

AGCTCTTGGTGGGAAGACATTTAAAATGAAGTTTGGTCATCATGGAGGAAATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcct ... ttctctgcagAACCATAATTATGCTGTTGACCCAGAGTCACTTCCAGAAGGGGTGAAAGTAACACATATCAATCTCAACGATAATAGCTGTGCCGGCCTTCAGTACCCTA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCTCTTGGTGGGAAGACATTTAAAATGAAGTTTGGTCATCATGGAGGAAATCATCCTGTTTGTGACCTTCGAAGTGGACGTGTCGACATAAGTGCACAAgtttgttcctgacctgacttcttactgttttgatactgaatgcgattcatgttttttgactctcgagggaaatagccttccgtttgaatttcagtacaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA