1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCTgtaaggctttcttatgtcagctctttaagtttactagcctgcatgctactgcaaacagtgtatgaaaaggcaataccaagctttacttggtgcaagattt...
species | Oryza sativa |
transcript | LOC_Os02g44510.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCT GACCTTAAAGCTACAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCTEST: gi|58654435|gb|CK043115.1|CK043115
genomic: GTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCTgtaaggcttt ... ttttattcagGACCTTAAAGCTACAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCT
EST: GTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCT GACCTTAAAGCTGCAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCTEST: gi|88590027|gb|CI708851.1|CI708851
genomic: GTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCTgtaaggcttt ... ttttattcagGACCTTAAAGCTACAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCT
EST: GTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCT GACCTTAAAGCTACAAGACAAGGGEST: gi|88592646|gb|CI710765.1|CI710765
genomic: GTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCTgtaaggcttt ... ttttattcagGACCTTAAAGCTACAAGACAAGGG
EST: GTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCT GACCTTAAAGCEST: gi|29624544|gb|CB629555.1|CB629555
genomic: GTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCTgtaaggcttt ... ttttattcagGACCTTAAAGC
EST: GTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCT GACCTTAAAGCTGCAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCTEST: gi|33794022|gb|CF322901.1|CF322901
genomic: GTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCTgtaaggcttt ... ttttattcagGACCTTAAAGCTACAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCT
EST: GTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCT GACCTTAAAGCTACAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCTEST: gi|58689586|gb|CK078273.1|CK078273
genomic: GTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCTgtaaggcttt ... ttttattcagGACCTTAAAGCTACAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCT
EST: GTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCT GACCTTAAAGCTGCAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCT
genomic: GTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCTgtaaggcttt ... ttttattcagGACCTTAAAGCTACAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCTgtaaggctttcttatgtcagctctttaagtttactagcctgcatgctactgcaaacagtgtatgaaaaggcaataccaagctttacttggtgcaagattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG