Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGCTTCGAAGGCTATCATTCCTGAGAGATACATACTCAAGGGGGAGCACCCCTAGCAATGCGATAGTAGGCAGCCTGAGTACTTCCCCTGTTGCGAGgtgcgtaaattactcgtttccattcattcacttcttttgtgccataaccttaaaattagcgccaaaccatcacgagcaactcataagccccgtgctctgctgtaatgcag

Basic information

species Oryza sativa
transcript LOC_Os02g43050.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g43050.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G129569_T01 (Zea mays), 5'ss of exon 13
TGGAGCTTCGAAGGCTATCATTCCTGAGAGATACATACTCAAGGGGGAGCACCCCTAGCAATGCGATAGTAGGCAGCCTGAGTACTTCCCCTGTTGCGAGgtgcgtaaat-tactcgtttccattcattcacttcttttgtgccataaccttaa---aattagcgccaaaccatcac---gagcaactcataagcccc--gtgctctgctgtaatgcag
||||||| || |||||||||||||| |||||||| |||||  |||| | |||||||||||||||| | ||||||||| |||   ||||||| | ||||||||  |  ||| || |  | |  || | | ||||| |  |||  |||||| | |    ||||  ||| |   | || |   ||   |   || |  | |   ||  | ||| | ||||||
TGGAGCTCCGGAGGCTATCATTCCTCAGAGATACCTACTCTCGGGGAAACACCCCTAGCAATGCGGTGGTAGGCAGCTTGAACTCTTCCCCCGCTGCGAGgtaagcgaatatatttatatatatacttgcactt-tcctgtatcataacttgatgacaattgtcgcaacgtcttctcttagaatgagaaatgattctccaatgaaccgct-tcatgcag