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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcatacagacttgatcaagctgttttttactgccacgtatatgcaatgcaacttctgtcttgtgaacatgccataacaagttactgacaagttactttctgtacaaaatgcag

Basic information

species Oryza sativa
transcript LOC_Os02g42320.3
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88517083|gb|CI444737.1|CI444737
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88956166|gb|CI092454.1|CI092454
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88269320|gb|CI380618.1|CI380618
EST:     CAGCCAACAAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTAGAGTAAAT
genomic: CAGCCAAC-AATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86258904|gb|CI004448.1|CI004448
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88544057|gb|CI474119.1|CI474119
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88461191|gb|CI547371.1|CI547371
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88985654|gb|CI016363.1|CI016363
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|3766855|gb|AU030965.1|AU030965
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88203677|gb|CI203526.1|CI203526
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|163917780|gb|EG711302.1|EG711302
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|89170298|gb|CI039575.1|CI039575
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|89178076|gb|CI391255.1|CI391255
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|11414339|gb|AU165132.1|AU165132
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88289213|gb|CI553189.1|CI553189
EST:     TCAGCCAACCATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88239782|gb|CI238944.1|CI238944
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88263428|gb|CI367202.1|CI367202
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|89197813|gb|CI013803.1|CI013803
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86422896|gb|CI060469.1|CI060469
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|33661637|gb|CF292604.1|CF292604
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCCAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86844003|gb|CI336703.1|CI336703
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88977911|gb|CI384393.1|CI384393
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCCTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88243911|gb|CI243033.1|CI243033
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88254319|gb|CI352945.1|CI352945
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|27554138|gb|CA998038.1|CA998038
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|163925975|gb|EG709675.1|EG709675
EST:     GAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: GAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86546047|gb|CI186253.1|CI186253
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86493119|gb|CI135752.1|CI135752
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88852675|gb|CI008868.1|CI008868
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|89197364|gb|CI009984.1|CI009984
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88523673|gb|CI451521.1|CI451521
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86509053|gb|CI151686.1|CI151686
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88965320|gb|CI009356.1|CI009356
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|3767760|gb|AU031787.1|AU031787
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88995416|gb|CI036991.1|CI036991
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88375025|gb|CI523290.1|CI523290
EST:     TCAGCCCACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88236034|gb|CI235236.1|CI235236
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88452218|gb|CI552926.1|CI552926
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88221720|gb|CI221676.1|CI221676
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88252208|gb|CI350636.1|CI350636
EST:     CAGCCAACAATATTGAAATTGGAGTTATTCGATCTGAGCCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: CAGCCAACAATATTGAAATTGGAGTTATTCGATCTGA-CCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|33656047|gb|CF278661.1|CF278661
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|87028711|gb|CI349430.1|CI349430
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|87032496|gb|CI266136.1|CI266136
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|89190657|gb|CI392510.1|CI392510
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88473338|gb|CI410609.1|CI410609
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86494880|gb|CI137513.1|CI137513
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|87029179|gb|CI276447.1|CI276447
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88995615|gb|CI022938.1|CI022938
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86602433|gb|CI264761.1|CI264761
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|29613823|gb|CB618836.1|CB618836
EST:     TCAGCCAACAATATGGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88985585|gb|CI016294.1|CI016294
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86826710|gb|CI364238.1|CI364238
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86868986|gb|CI334358.1|CI334358
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88385141|gb|CI561797.1|CI561797
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88489108|gb|CI426380.1|CI426380
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|27576119|gb|CA998813.1|CA998813
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGACGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88201510|gb|CI201865.1|CI201865
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88259408|gb|CI363701.1|CI363701
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86525993|gb|CI166199.1|CI166199
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|89171067|gb|CI040344.1|CI040344
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|58586930|gb|CF985238.1|CF985238
EST:     GCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88503429|gb|CI430935.1|CI430935
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|396941624|gb|HO188281.1|HO188281
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|33655926|gb|CF278540.1|CF278540
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88220149|gb|CI219709.1|CI219709
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88240749|gb|CI239911.1|CI239911
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88456958|gb|CI529159.1|CI529159
EST:     TCAGCCAACAATAGTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGGTGGAGTAAA
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGG-TGGAGTAAA
EST: gi|25797837|gb|CA753798.1|CA753798
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88488525|gb|CI425796.1|CI425796
EST:     TCAGCCAACAATATTG-AATTGGAGTTATTCGATCTGACCGTG-ATTCAA                         A-TTCTAACCCCGGCAGAAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAA
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAG-AGATCAAGGATTTCTTGGAAGAGGTGGAGTAAA
EST: gi|88544425|gb|CI472522.1|CI472522
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88963243|gb|CI026908.1|CI026908
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86834955|gb|CI346039.1|CI346039
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACTGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|33803410|gb|CF327579.1|CF327579
EST:     TCAGCCAACGATATTGAAATTGGAGTTATTCGATCTGCCCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|33655042|gb|CF277656.1|CF277656
EST:     TCAGCCAACAATATCGAAATTGGAGCTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|5771116|gb|AU078005.1|AU078005
EST:     CAGCCAACAATATTGAAATTGGAGTTATT-GCATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: CAGCCAACAATATTGAAATTGGAGTTATTCG-ATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88901506|gb|CI008934.1|CI008934
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcatacagacttgatcaagctgttttttactgccacgtatatgcaatgcaacttctgtcttgtgaacatgccataacaagttactgacaagttactttctgtacaaaatgcag

- - - - - - - - - - - - - - - - -  TTGGAG