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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCATTCGTGATATCATTCAGAACCATTTGTTGCAGgtaaatatatttatttttggtatgcagcatagttttccatgcacttgccttttctaggggagttttatgtgcactttcacttcccaatgtgaatctacat...

Basic information

species Oryza sativa
transcript LOC_Os02g38840.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g38840.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G031107_T01 (Zea mays), 5'ss of exon 9
CATCATTCGTGATATCATTCAGAACCATTTGTTGCAGgtaaatatat-ttatttttggtatgcagcatagttttccatgcacttgccttttctaggggagttttatgtgcactttcacttcccaatgtgaatctacat
 |||||||||||||||||||||||||| ||||||||||||||||||| ||||        |    | | | |||    |   ||  |    |  |     ||| |  || |  |  ||| |   | | | |  |   |
TATCATTCGTGATATCATTCAGAACCACTTGTTGCAGgtaaatatatcttatgaacttcttttgccgttggtttatgagtgattttccagacacgtactttttgacttgaatctagact-ctagaggagtacttgttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218492006|gb|FG967745.1|FG967745
EST:     ATCATTCAGAACCA-TTGTTGCA-                         GTCTTCTGTTTGGTGGCTATGGAAAAGCCTGTCTCTCTTAAGCCTGAGCAC
genomic: ATCATTCAGAACCATTTGTTGCAGgtaaatatat ... ttgtctgcagGTCTTCTGTTTGGTGGCTATGGAAAAGCCTGTCTCTCTTAAGCCTGAGCAC