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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAGTACATATTCAAGCATCCTCAACCTAAAAGACCAAAGTCATTGCGGATATACGAAACTCATGTTGGAATGAGTAGCACGgtaatgcatcttttcttttaattactagccatatacagttcaagttaacttacattctagaattatattaaagtgctgttagccttaatttttataactg...

Basic information

species Oryza sativa
transcript LOC_Os02g32660.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g32660.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G032628_T01 (Zea mays), 5'ss of exon 9
GAGAAGTACATATTCAAGCATCCTCAACCTAAAAGACCAAAGTCATTGCGGATATACGAAACTCATGTTGGAATGAGTAGCACGgtaatgcatcttttcttttaattactagccatatacagttcaagttaacttacattctagaattatattaaagtgctgttagccttaatt---tttataactg-
|  |||||  | |||| |||| | ||||||||| ||||||| |||||||||||||| ||||| ||||| |||||||||||| |||||   || |||||| |||   | ||     || ||||| | ||  |  |   |  |  |              |  || | ||         ||| |   || 
GTAAAGTATGTGTTCAGGCATGCGCAACCTAAACGACCAAAATCATTGCGGATATATGAAACACATGTCGGAATGAGTAGCCCGgtatgtcaccttttccttttgattctt----tagacagtgctaggcatatgtaacacccggccacctgggggacgtcgtcaccccagggcgagtttttttttga

upper sequence: LOC_Os02g32660.1 (Oryza sativa), 5'ss of exon 9
lower sequence: AT5G03650.1 (Arabidopsis thaliana), 5'ss of exon 9
GAGAAGTACATATTCAAGCATCCTCAACCTAAAAGACCAAAGTCATTGCGGATATACGAAACTCATGTTGGAATGAGTAGCACGgtaa-----tgcatcttttcttttaattacta-------------gccatatacagttcaagttaacttacattctagaattatattaaagtgctgttagccttaatttttataactg----------------------------------------------------------------------------
||||||||  ||||||| ||||||||||| || ||||| |||||  |  |||| || ||| | |||||||| ||||||||||||||       ||  || ||   || ||| | ||               ||| |      |||| |   ||| |   ||  | |||   | | || || |    | | | | | |   ||                                                                            
GAGAAGTATGTATTCAAACATCCTCAACCAAAGAGACCTAAGTCGCTAAGGATTTATGAAGCACATGTTGGCATGAGTAGCACGgtgtgtgtctggctccttgtcttaaataattatgttttggtccttaacatctgtgtaccaagcttctttataacgtatcaatatgccacactgttggtttgttcagtatgtttgtttgactataataacatagatcccaatttctggatatttctctatatcacgtgaataatgtcagtgtacttgttatgcag