Sequence
atgc intronic sequence ATGC exonic sequenceGTCAAACATGCTGAGGCTAACAATGAGCAGCAGATACCAGTTCCATAGCTGGTTCACATACTCAATGCTTCTGTTGTTCCTCTTTACAGCTGGCTTTTGGgtaattaagctaattgcaggcactaacctaaagcgttgttctttggacttctgttcatgccattgcgataataattttttttctaatttaaccttctctgtgtcacag
Basic information
species | Oryza sativa |
transcript | LOC_Os02g31874.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G477146_T02 (Zea mays), 5'ss of exon 9
GTCAAACATGCTGAGGCTAACAATGAGCAGCAGATACCAGTTCCATAGCTGGTTCACATACTCAATGCTTCTGTTGTTCCTCTTTACAGCTGGCTTTTGGgtaattaagctaattgcaggcactaacctaaagcgttgttctttggacttctgttcatgccattgcgataataattttttttctaatttaaccttc------tctgtgtcacag
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GTCTAACATGCTGAGACTGACGATGAGCAGCAGATACGAGTTCCATAGCTGGTTCACATATTCGATCGTTCTCCTGTTTCTGTGTACTGCTGGATTTTGGgta-----------tg-----gctaacctaatgtgttgttcctgaggctactccgc-tgctgctgttttcctacgtcgttgtctaattcaagttccgtatgccttatgtgacag
upper sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G144254_T03 (Zea mays), 5'ss of exon 6
GTCAAACATGCTGAGGCTAACAATGAGCAGCAGATACCAGTTCCATAGCTGGTTCACATACTCAATGCTTCTGTTGTTCCTCTTTACAGCTGGCTTTTGGgtaattaagctaattgcaggcactaacctaaagcgttgttctttggacttctgttcatgccattgcgataataattttttttctaatttaaccttctctgtgtcacag
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GTCTAACATGATGAGGCTGACTATGAACAGCAGATACGAGTTTCATAGCTGGTTCACATACTCAATTGTTCTTCTGTTTCTGTGTACCGCTGGATTTTGGgta-----------tg-----gctaacctaatgcgttgttcatgaggctactctgc-tgctcttatt-------tgtctaattcaactccatatgccctatgtgacag
upper sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 9
GTCAAACATGCTGAGGCTAACAATGAGCAGCAGATACCAGTTCCATAGCTGGTTCACATACTCAATGCTTCTGTTGTTCCTCTTTACAGCTGGCTTTTGGgtaattaagctaattgcaggcactaacctaaagcgttgttctttggacttctgttcatgccattgcgataataattttttttctaatttaaccttctctgtgtcacag
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CTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTGGTTCACATACTCCATGCTTCTTTGCTTTCTTAGTACAGCTGGATTTTGGgtaa--agatctcttgtaacttataaccttct-ctttgcatgttaaaattaacttttggttgttaaaat--taatatgctgagaagctc--cttgataggaattgaa-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58688305|gb|CK076992.1|CK076992EST: GGTTCACATACTCAATGCTTCTGTTGTTCCTCTTTACAGCTGGCTTTTGG ATGGCGAGATTGAATGAAGGCCTGTCTCTTTTTGATGCAATACTGATTGTT
genomic: GGTTCACATACTCAATGCTTCTGTTGTTCCTCTTTACAGCTGGCTTTTGGgtaattaagc ... tgtgtcacagATGGCGAGATTGAATGAAGGCCTGTCTCTTTTTGATGCAATACTGATTGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCAAACATGCTGAGGCTAACAATGAGCAGCAGATACCAGTTCCATAGCTGGTTCACATACTCAATGCTTCTGTTGTTCCTCTTTACAGCTGGCTTTTGGgtaattaagctaattgcaggcactaacctaaagcgttgttctttggacttctgttcatgccattgcgataataattttttttctaatttaaccttctctgtgtcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG