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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTCGCAGCATATGTCTTCAGAATTGTGTCAGGAAGAGTTTGGTGTATGCAAACTGGGGAGTCCAAGCACAAGTAGCCCTCCAATTGCTTCGTTTGgtatgctgttttcctttttcatctcaatgtatgttttgctgataggtgcattttctgacacggatggttatattgcaag

Basic information

species Oryza sativa
transcript LOC_Os02g31290.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g31290.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G459746_T01 (Zea mays), 5'ss of exon 9
CTTGTCGCAGCATATGTCTTCAGAATTGTGTCAGGAAGAGTTTGGTGTATGCAAACTGGGGAGTCCAAGCACAAGTAGCCCTCCAATTGCTTCGTTTGgtatgctgttttcctttttcatctc-aatgtatgttttgctgataggtgcattttctgacacggatggttatattgcaag------------------
 ||  | ||||| |||||   ||| | | | || ||||| |||||||||||||||||||| |||| |||||||| |||||||||| |  |||| || |||||||||||    ||||||||||  |||||||||  ||   |||| | ||||| |||||| ||| | | ||  | ||||                  
ATTAACACAGCACATGTCCAAAGAGTCGGGGCAAGAAGAATTTGGTGTATGCAAACTGGGCAGTCTAAGCACAAATAGCCCTCCATTGCCTTCATTGGgtatgctgttggtttttttcatctttaatgtatgtcatgtctatagctacatttcctgacatggaggataattcttcaaggttcatcttatatggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29628170|gb|CB633181.1|CB633181
EST:     ATGCAAACTGGGGAGTCCAAGCACAAGTAGCCCTCCAATTGCTTCGTTTG                         GTTCTACTAATTTGGCAACAATAACTTCAACTGGTCATGAAAATGGA
genomic: ATGCAAACTGGGGAGTCCAAGCACAAGTAGCCCTCCAATTGCTTCGTTTGgtatgctgtt ... atattgcaagGTTCTACTAATTTGGCAACAATAACTTCAACTGGTCATGAAAATGGA
EST: gi|29644611|gb|CB649618.1|CB649618
EST:     ATGCAAACTGGGGAGTCCAAGCACAAGTAGCCCTCCAATTGCTTCGTTTG                         GTTCTACTAATTTGGCAACAATAACTTCAACTGGTCATGAAAATGGAAGTA
genomic: ATGCAAACTGGGGAGTCCAAGCACAAGTAGCCCTCCAATTGCTTCGTTTGgtatgctgtt ... atattgcaagGTTCTACTAATTTGGCAACAATAACTTCAACTGGTCATGAAAATGGAAGTA
EST: gi|88425200|gb|CI564717.1|CI564717
EST:     ATGCAAACTGGGGAGTCCAAGCACAAGTAGCCCTCCAATTGCTTCGTTTG                         GTTCTACTAATTTGGCAACAATAACTTCAACTGGTCATGAAAATGGAAGTA
genomic: ATGCAAACTGGGGAGTCCAAGCACAAGTAGCCCTCCAATTGCTTCGTTTGgtatgctgtt ... atattgcaagGTTCTACTAATTTGGCAACAATAACTTCAACTGGTCATGAAAATGGAAGTA