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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCAGTCAGTTATAACGGAATTAAGAGAGCGTTTGCAATCACACTCAATGAAATCTTATAGGGCTCGCTTCCAGAAgtaagatcaactttcacctttagttacacatggctattaataaataatgttcttttctaactagtcagccaactttaaaccttgtgtggctcatgcatca...

Basic information

species Oryza sativa
transcript LOC_Os02g28040.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g28040.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G148913_T01 (Zea mays), 5'ss of exon 9
----------GTGCAGTCAGTTATAACGGAATTAAGAGAGCGTTTGCAATCACACTCAATGAAATCTTATAGGGCTCGCTTCCAGAAgtaagatcaactttca-----cctttagttacacatggctattaataaataatgttcttttctaactagtcagccaactttaaaccttgtgtggctcatgcatca
          |||||||| |||||| |||| ||||||||||||||||| || ||||||||||| || ||||||||| | || || |||||||| | | | |||      ||| |  ||||  | ||| ||    || |   |  | ||| | ||     | |  |||   |   ||      |||| | || 
GCATGTGCAGGTGCAGTCTGTTATATCGGAGTTAAGAGAGCGTTTGCAGTCGCACTCAATGAAGTCCTATAGGGCTAGATTTCAAAAgtaagacccattatcaggttatcttgaactacat-tagctctttgccaaaaccttcatcttccatctcactgggc--cttgttattctgaaactttcat-cttc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|2427685|gb|C72148.1|C72148
EST:     GAGCGTTTGCAATCACACTCAATGAAATCTTATAGGGCTCGCTTCCAGAA                         AATATATGACATCTGCATGTCTGCAAATGCCCAGCTTTTTACAGGCATTGA
genomic: GAGCGTTTGCAATCACACTCAATGAAATCTTATAGGGCTCGCTTCCAGAAgtaagatcaa ... atttgtgcagAATATATGACATCTGCATGTCTGCAAATGCCCAGCTTTTTACAGGCATTGA
EST: gi|58592932|gb|CF991240.1|CF991240
EST:     GAGCGTTTGCAATCACACTCAATGAAATCTTATAGGGCTCGCTTCCAGAA                         AATATATGACATCTGCA
genomic: GAGCGTTTGCAATCACACTCAATGAAATCTTATAGGGCTCGCTTCCAGAAgtaagatcaa ... atttgtgcagAATATATGACATCTGCA
EST: gi|88411251|gb|CI564372.1|CI564372
EST:     GCGTTTGCAATCACACTCAATGAAATCTTATAGGGCTCGCTTCCAGAA                         AATATATGACATCTGCATGTCTGCAAATGCCCAGCTTTTTACAGGCATTGA
genomic: GCGTTTGCAATCACACTCAATGAAATCTTATAGGGCTCGCTTCCAGAAgtaagatcaa ... atttgtgcagAATATATGACATCTGCATGTCTGCAAATGCCCAGCTTTTTACAGGCATTGA
EST: gi|58655978|gb|CK044658.1|CK044658
EST:     AGCGTTTG-AATCACACTCAAGTGAAATCTTATAGGGCTCGCTTCCAGAA                         AATATATGACATCTGCATGTCTGCAAATGCCCAGCTTTTTACAGGCATTGA
genomic: AGCGTTTGCAATCACACTCAA-TGAAATCTTATAGGGCTCGCTTCCAGAAgtaagatcaa ... atttgtgcagAATATATGACATCTGCATGTCTGCAAATGCCCAGCTTTTTACAGGCATTGA
EST: gi|29674807|gb|CB671082.1|CB671082
EST:     GAGCGTTTGCAATCACACTCAATGAAATCTTATAGGGCTCGCTTCCAGAA                         AATATATGACATCTGCATGTCTGCAAATGCCCAGCTTTTTACAGGCATTGA
genomic: GAGCGTTTGCAATCACACTCAATGAAATCTTATAGGGCTCGCTTCCAGAAgtaagatcaa ... atttgtgcagAATATATGACATCTGCATGTCTGCAAATGCCCAGCTTTTTACAGGCATTGA
EST: gi|29678752|gb|CB675027.1|CB675027
EST:     GAGCGTTTGCAATCACACTCAATGAAATCCTATAAGGCTCGCTTCCAGAA                         A-TATATGACATCTGCATGTCTG
genomic: GAGCGTTTGCAATCACACTCAATGAAATCTTATAGGGCTCGCTTCCAGAAgtaagatcaa ... atttgtgcagAATATATGACATCTGCATGTCTG