1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATCTAGTGCTTTCAAATAAGCTGGTTCTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACTgtaagtctttgctcattgaaaattaatcttttgcgctgggcacttaatgtgccatattgcaatttgaatttgttagtagataaatatactctctttaacatatgattgcacatttgatcatattgaccttcactgttgtctcag
species | Oryza sativa |
transcript | LOC_Os02g27360.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GGTTCTTTATGATTTAGAAAATCAAGCTATCGGGTGGCCAGATTACAACT GCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTAEST: gi|88562526|gb|CI493243.1|CI493243
genomic: GGTTCTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACTgtaagtcttt ... gttgtctcagGCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTA
EST: TCGGGTGGGCAGATTACAGCT GCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTAEST: gi|86493808|gb|CI136441.1|CI136441
genomic: TCGGGTGGGCAGATTACAACTgtaagtcttt ... gttgtctcagGCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTA
EST: GGTTCTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACT GCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTAEST: gi|88471689|gb|CI408960.1|CI408960
genomic: GGTTCTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACTgtaagtcttt ... gttgtctcagGCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTA
EST: GTTCTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACT GCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTAEST: gi|88561222|gb|CI491939.1|CI491939
genomic: GTTCTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACTgtaagtcttt ... gttgtctcagGCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTA
EST: CTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACT GCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTAEST: gi|88476517|gb|CI413788.1|CI413788
genomic: CTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACTgtaagtcttt ... gttgtctcagGCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTA
EST: TCGGGTGGGCAGATTACAACT GCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTAEST: gi|88903097|gb|CI088635.1|CI088635
genomic: TCGGGTGGGCAGATTACAACTgtaagtcttt ... gttgtctcagGCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTA
EST: GGTTCTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACT GCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTAEST: gi|88373849|gb|CI508468.1|CI508468
genomic: GGTTCTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACTgtaagtcttt ... gttgtctcagGCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTA
EST: TTTAGAAAATCAAGCTATCGGNTGGGCAGATTACAACT GCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTAEST: gi|88287873|gb|CI510153.1|CI510153
genomic: TTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACTgtaagtcttt ... gttgtctcagGCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTA
EST: AATCNAGCTATCGGGTGGGCAGATTACAACT GGTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTAEST: gi|88246534|gb|CI246383.1|CI246383
genomic: AATCAAGCTATCGGGTGGGCAGATTACAACTgtaagtcttt ... gttgtctcagGCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTA
EST: GGTTCTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACT GCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTAEST: gi|88564859|gb|CI495576.1|CI495576
genomic: GGTTCTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACTgtaagtcttt ... gttgtctcagGCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTA
EST: CTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACT GCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTAEST: gi|88298083|gb|CI558488.1|CI558488
genomic: CTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACTgtaagtcttt ... gttgtctcagGCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTA
EST: GCAGATTACAACT GCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTAEST: gi|88996348|gb|CI389059.1|CI389059
genomic: GCAGATTACAACTgtaagtcttt ... gttgtctcagGCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTA
EST: GTTCTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACT GCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTAEST: gi|88566507|gb|CI497224.1|CI497224
genomic: GTTCTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACTgtaagtcttt ... gttgtctcagGCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTA
EST: GGCAGATTACAACT GCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTAEST: gi|88472773|gb|CI410044.1|CI410044
genomic: GGCAGATTACAACTgtaagtcttt ... gttgtctcagGCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTA
EST: TCGGGTGGGCAGATTACAACT GCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTAEST: gi|88228038|gb|CI227518.1|CI227518
genomic: TCGGGTGGGCAGATTACAACTgtaagtcttt ... gttgtctcagGCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTA
EST: GGTTCTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACT GCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTAEST: gi|88373848|gb|CI508467.1|CI508467
genomic: GGTTCTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACTgtaagtcttt ... gttgtctcagGCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTA
EST: TTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACT GCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTAEST: gi|88373954|gb|CI508573.1|CI508573
genomic: TTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACTgtaagtcttt ... gttgtctcagGCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTA
EST: AAATCAAGCTATCGGGTGGGCAGATTACAACT NCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTA
genomic: AAATCAAGCTATCGGGTGGGCAGATTACAACTgtaagtcttt ... gttgtctcagGCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTAGTGCTTTCAAATAAGCTGGTTCTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACTgtaagtctttgctcattgaaaattaatcttttgcgctgggcacttaatgtgccatattgcaatttgaatttgttagtagataaatatactctctttaacatatgattgcacatttgatcatattgaccttcactgttgtctcag
- - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT