1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
GCTTGAGAACACTCTTAACTATGGCCTTGAGCGAGTGTGGGCTTTAGGATACATGAAGGGTTCAAGAAGgtattggaaatattacactcttactattcggatgctatggacttacggttaatgtcaagtaccatgatactaaatatcacctattcatgtgctattgaag...
species | Oryza sativa |
transcript | LOC_Os02g11830.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TATGGCCTTGAGCGAGTGTGGGCTTTAGGATACATGAAGGGTTCAAGAAG GGTTGTGATCGGATATGATGAAGGGACAATAATGATAAAAATTGGCCGTGAEST: gi|29680637|gb|CB676912.1|CB676912
genomic: TATGGCCTTGAGCGAGTGTGGGCTTTAGGATACATGAAGGGTTCAAGAAGgtattggaaa ... acttgtgcagGGTTGTGATCGGATATGATGAAGGGACAATAATGATAAAAATTGGCCGTGA
EST: TATGGCCTTGAGCGAGTGTGGGCTTTAGGATACATGAAGGGTTCAAGAAG GGTTGTGATCGGATATGATGAAGGGACAATAATGATAAAAATTGGCCGTGAEST: gi|29671007|gb|CB667282.1|CB667282
genomic: TATGGCCTTGAGCGAGTGTGGGCTTTAGGATACATGAAGGGTTCAAGAAGgtattggaaa ... acttgtgcagGGTTGTGATCGGATATGATGAAGGGACAATAATGATAAAAATTGGCCGTGA
EST: TATGGCCTTGAGCGAGTGTGGGCTTTAGGATACATGAAGGGTTCAAGAAG GGTTGTGATCGGATATGATGAAGGGACAATAATGATAAAAATTGGCCGTGAEST: gi|88726867|gb|CI750522.1|CI750522
genomic: TATGGCCTTGAGCGAGTGTGGGCTTTAGGATACATGAAGGGTTCAAGAAGgtattggaaa ... acttgtgcagGGTTGTGATCGGATATGATGAAGGGACAATAATGATAAAAATTGGCCGTGA
EST: TATGGCCTTGAGCGAGTGTGGGCTTTAGGATACATGAAGGGTTCAAGAAG GGTTGTGATCGGATATGATGAAGGGACAATAATGATAAAAATTGGCCGTGAEST: gi|29613910|gb|CB618923.1|CB618923
genomic: TATGGCCTTGAGCGAGTGTGGGCTTTAGGATACATGAAGGGTTCAAGAAGgtattggaaa ... acttgtgcagGGTTGTGATCGGATATGATGAAGGGACAATAATGATAAAAATTGGCCGTGA
EST: TATGGCCTTGAGCGAGTGTGGGCTTTAGGATACATGAAGGGTTCAAGAAG GGTTGTGATCGGATATGATGAAGGGACAATAATGATAAAAATTGGCCGTGA
genomic: TATGGCCTTGAGCGAGTGTGGGCTTTAGGATACATGAAGGGTTCAAGAAGgtattggaaa ... acttgtgcagGGTTGTGATCGGATATGATGAAGGGACAATAATGATAAAAATTGGCCGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTGAGAACACTCTTAACTATGGCCTTGAGCGAGTGTGGGCTTTAGGATACATGAAGGGTTCAAGAAGgtattggaaatattacactcttactattcggatgctatggacttacggttaatgtcaagtaccatgatactaaatatcacctattcatgtgctattgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG