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GTCATGTGTATGAGGCAATCGATGCTCTTCCTGTAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAGgtaaaccttgtagcatatatcactcatctgaaataaatacatattctgttgccacttatttgaaggtatatttattttggagatggtgcatgtaaaaaag...
species | Oryza sativa |
transcript | LOC_Os02g10070.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAG GTGGAGAGTGAGTT-CAAAAAGGCTATGACAAAGEST: gi|58695418|gb|CK084105.1|CK084105
genomic: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAGgtaaaccttg ... ttatttgcagGTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAG
EST: CCCAGTTTACCACAGGAGTGATGGCACTTCAG GTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAAEST: gi|29614058|gb|CB619071.1|CB619071
genomic: CCCAGTTTACCACAGGAGTGATGGCACTTCAGgtaaaccttg ... ttatttgcagGTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAA
EST: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAG GTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAAEST: gi|14571277|gb|BI118645.1|BI118645
genomic: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAGgtaaaccttg ... ttatttgcagGTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAA
EST: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAG GTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAAEST: gi|58599089|gb|CK009617.1|CK009617
genomic: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAGgtaaaccttg ... ttatttgcagGTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAA
EST: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAG GTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAAEST: gi|29614020|gb|CB619033.1|CB619033
genomic: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAGgtaaaccttg ... ttatttgcagGTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAA
EST: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAG GTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAAEST: gi|33794508|gb|CF323141.1|CF323141
genomic: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAGgtaaaccttg ... ttatttgcagGTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAA
EST: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAG GTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAAEST: gi|58678175|gb|CK066862.1|CK066862
genomic: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAGgtaaaccttg ... ttatttgcagGTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAA
EST: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAG GTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAAGEST: gi|58668188|gb|CK056874.1|CK056874
genomic: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAGgtaaaccttg ... ttatttgcagGTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAAG
EST: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAG GTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAA
genomic: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAGgtaaaccttg ... ttatttgcagGTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCATGTGTATGAGGCAATCGATGCTCTTCCTGTAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAGgtaaaccttgtagcatatatcactcatctgaaataaatacatattctgttgccacttatttgaaggtatatttattttggagatggtgcatgtaaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaa