1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTCAACAGCGTCCACATCACAGAGCAGTTCATCTCGTAAAACCACGGAAAAGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtatttttgcaatttatgcacctattggcagctgtctggaaaacgagtgctagttttggagctacttgagatgcaagaacctctagtgaccaatgt...
species | Oryza sativa |
transcript | LOC_Os02g08480.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGGTTGTTTTTGGCCCTGCTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|27921103|gb|CB096911.1|CB096911
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|86425429|gb|CI070526.1|CI070526
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|29641787|gb|CB646794.1|CB646794
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|86414416|gb|CI068819.1|CI068819
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|86837102|gb|CI347616.1|CI347616
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|89191945|gb|CI250886.1|CI250886
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|86425876|gb|CI070973.1|CI070973
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|29641788|gb|CB646795.1|CB646795
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|89175161|gb|CI111680.1|CI111680
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|88961112|gb|CI096515.1|CI096515
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|88510728|gb|CI438234.1|CI438234
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|87018863|gb|CI256748.1|CI256748
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAGCAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|86833083|gb|CI333682.1|CI333682
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGCCCCTGGTGGGAACCCCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAATAAAGATGAACCGAAATTCEST: gi|88225329|gb|CI225245.1|CI225245
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|88222206|gb|CI222162.1|CI222162
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|88490808|gb|CI428080.1|CI428080
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|86527163|gb|CI167369.1|CI167369
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|88249019|gb|CI248868.1|CI248868
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|88443453|gb|CI552196.1|CI552196
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|88248256|gb|CI248105.1|CI248105
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|29663476|gb|CB659751.1|CB659751
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|87018867|gb|CI256752.1|CI256752
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAGCAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|88484133|gb|CI421404.1|CI421404
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|86492083|gb|CI134716.1|CI134716
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCEST: gi|86487488|gb|CI130121.1|CI130121
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
EST: AGCTTGTTTTTGGCTCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAG GTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
genomic: AGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtattt ... ttcaatgtagGTGCCTGAAAAGGAACCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCAACAGCGTCCACATCACAGAGCAGTTCATCTCGTAAAACCACGGAAAAGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGgttggtatttttgcaatttatgcacctattggcagctgtctggaaaacgagtgctagttttggagctacttgagatgcaagaacctctagtgaccaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA