1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TAATTGGTCAGTGACACATGTTGATTGGTCTGAAGGAAAATGGCATCCAAGGTCGTATAGAGCTATTGATGTTACCTATGCACTCTTGAAGAACATAACGgtatgctctacatcggtaaatggacacatgctttcggccctttgccaattgacatgtcctctatgtgtggacacttaccaatgtactttactgttgtgtag
species | Oryza sativa |
transcript | LOC_Os02g07880.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GGTCGTATAGAGCTATTGATGTTACCTATGCACTCTTGAAGAACATAACG GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAGEST: gi|427667|gb|D23801.1|D23801
genomic: GGTCGTATAGAGCTATTGATGTTACCTATGCACTCTTGAAGAACATAACGgtatgctcta ... tgttgtgtagGCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAG
EST: GGTCGTATAGAGCTATTGATGTTACCTATGCACTATTGANGAACATAACG GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAGEST: gi|86429643|gb|CI076324.1|CI076324
genomic: GGTCGTATAGAGCTATTGATGTTACCTATGCACTCTTGAAGAACATAACGgtatgctcta ... tgttgtgtagGCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAG
EST: GGTCGTATAGAGCTATTGATGTTACCTATGCACTCTTGAAGAACATAACG GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAGEST: gi|29633318|gb|CB638327.1|CB638327
genomic: GGTCGTATAGAGCTATTGATGTTACCTATGCACTCTTGAAGAACATAACGgtatgctcta ... tgttgtgtagGCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAG
EST: GGTCGTATAGAGCTATTGATGTTACCTATGCACTCTTGAAGAACATAACG GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAGEST: gi|86600858|gb|CI356615.1|CI356615
genomic: GGTCGTATAGAGCTATTGATGTTACCTATGCACTCTTGAAGAACATAACGgtatgctcta ... tgttgtgtagGCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAG
EST: ACTCTTGAAGAACATAACG GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAGEST: gi|86832776|gb|CI345190.1|CI345190
genomic: ACTCTTGAAGAACATAACGgtatgctcta ... tgttgtgtagGCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAG
EST: ACCTATGCACTCTTGAAGAACATAACG GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAGEST: gi|29663728|gb|CB660003.1|CB660003
genomic: ACCTATGCACTCTTGAAGAACATAACGgtatgctcta ... tgttgtgtagGCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAG
EST: GGTCGTATAGAGCTATTGATGTTACCTATGCACTCTTGAAGAACATAACG GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAGEST: gi|86492716|gb|CI135349.1|CI135349
genomic: GGTCGTATAGAGCTATTGATGTTACCTATGCACTCTTGAAGAACATAACGgtatgctcta ... tgttgtgtagGCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAG
EST: GGTCGTATAGAGCTATTGATGTTACCTATGCACTCTTGAAGAACATAACG GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAG
genomic: GGTCGTATAGAGCTATTGATGTTACCTATGCACTCTTGAAGAACATAACGgtatgctcta ... tgttgtgtagGCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAATTGGTCAGTGACACATGTTGATTGGTCTGAAGGAAAATGGCATCCAAGGTCGTATAGAGCTATTGATGTTACCTATGCACTCTTGAAGAACATAACGgtatgctctacatcggtaaatggacacatgctttcggccctttgccaattgacatgtcctctatgtgtggacacttaccaatgtactttactgttgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC