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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTTGGTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttgttttctgtgatctgtaccttctttctcttcgggcaagaaaggttccctacttgctattttcacaaaacatttctattcttctattcgttt...

Basic information

species Oryza sativa
transcript LOC_Os02g07210.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88374144|gb|CI510962.1|CI510962
EST:     GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG                         ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: gi|86838295|gb|CI327687.1|CI327687
EST:     GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG                         ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGTTA
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: gi|88461529|gb|CI504656.1|CI504656
EST:     GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG                         ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: gi|89196459|gb|CI399045.1|CI399045
EST:     GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATNCAACTGAAG                         ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: gi|88567031|gb|CI497748.1|CI497748
EST:     GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG                         ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: gi|88516026|gb|CI443680.1|CI443680
EST:     GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG                         ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: gi|88276608|gb|CI397410.1|CI397410
EST:     GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG                         ATCTTCCCAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: gi|8858531|gb|AU095849.1|AU095849
EST:     GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG                         ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: gi|157651555|gb|EX451189.1|EX451189
EST:     GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG                         ATCTTCCAAATCGCAAGACCAGAAAGAAGCAC-GGCTG
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTG
EST: gi|88907452|gb|CI090246.1|CI090246
EST:     GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG                         ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: gi|88451001|gb|CI531596.1|CI531596
EST:     GTTAAGCTTCTGGAGTGAGGCGCACTACAATTCCTTGTATGCAACTGAAG                         ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: gi|33683116|gb|CF311355.1|CF311355
EST:     GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG                         ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: gi|88303817|gb|CI510622.1|CI510622
EST:     TTAAGGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG                         ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
genomic: TTAA-GCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: gi|88552935|gb|CI482994.1|CI482994
EST:     GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG                         ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: gi|88378068|gb|CI501337.1|CI501337
EST:     GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG                         ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCTTTGGTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttgttttctgtgatctgtaccttctttctcttcgggcaagaaaggttccctacttgctattttcacaaaacatttctattcttctattcgttt

- - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG