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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAAGAACTGTGCCCTGGTTACCGTACTGAAGAGATAGAGAAGTGTGTTAGAAACGCAACAATGTTTATTGAGAATACACAAGGCGAAGATGGTTCATGgtttgtagaaagagcatttactgaccagtggataatttttctctcttctagtctaacaataacttggttgtttggcag

Basic information

species Oryza sativa
transcript LOC_Os02g04750.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38481879|gb|CF965948.1|CF965948
EST:     AGAAACGCAACAATGTTTATTGAGAATACACAAGGCGAAGATGGTTCATG                         GTTAGGCACTTGGGGTGTATGCTTCACCTATGGGGCCTTCTTTTCAGTAAA
genomic: AGAAACGCAACAATGTTTATTGAGAATACACAAGGCGAAGATGGTTCATGgtttgtagaa ... tgtttggcagGTTAGGCACTTGGGGTGTATGCTTCACCTATGGGGCCTTCTTTTCAGTAAA
EST: gi|38483023|gb|CF966825.1|CF966825
EST:     GAAACGCAACAATGTTTATTGAG-AGAGGACAAGGCGAAGATGGTTCATG                         GTTAGGCACTTGGGGTGTATGCTTCACCTATGGGGCCTTCTTTTCAGTAAA
genomic: GAAACGCAACAATGTTTATTGAGAATA-CACAAGGCGAAGATGGTTCATGgtttgtagaa ... tgtttggcagGTTAGGCACTTGGGGTGTATGCTTCACCTATGGGGCCTTCTTTTCAGTAAA
EST: gi|117230816|gb|CT854085.1|CT854085
EST:     ATACACAAGGCGAAGATGGTTCATG                         GTTAGGCACTTGGGGTGTATGCTTCACCTATGGGGCCTTCTTTTCAGTAAA
genomic: ATACACAAGGCGAAGATGGTTCATGgtttgtagaa ... tgtttggcagGTTAGGCACTTGGGGTGTATGCTTCACCTATGGGGCCTTCTTTTCAGTAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAAAGAACTGTGCCCTGGTTACCGTACTGAAGAGATAGAGAAGTGTGTTAGAAACGCAACAATGTTTATTGAGAATACACAAGGCGAAGATGGTTCATGgtttgtagaaagagcatttactgaccagtggataatttttctctcttctagtctaacaataacttggttgtttggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG