1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
AGTTGTTTCATCAGTGGACAAGAAGCTGGAAGTAAAACCACGTTTTTTGGAAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAGgtaagaaattagtccagtattctttcaaaagaacaccaatcatttcaagcataaatcatacgtgaaactgttttttatcaaatgtttggcag
species | Oryza sativa |
transcript | LOC_Os02g04490.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAG GCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGAEST: gi|88306088|gb|CI635094.1|CI635094
genomic: AAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAGgtaagaaatt ... tgtttggcagGCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGA
EST: AAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAG GCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGAEST: gi|58653969|gb|CK042649.1|CK042649
genomic: AAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAGgtaagaaatt ... tgtttggcagGCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGA
EST: AAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAG GCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGAEST: gi|58667783|gb|CK056469.1|CK056469
genomic: AAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAGgtaagaaatt ... tgtttggcagGCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGA
EST: GAGTTCCCATACAAGTCCAAG GCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGAEST: gi|29635246|gb|CB640255.1|CB640255
genomic: GAGTTCCCATACAAGTCCAAGgtaagaaatt ... tgtttggcagGCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGA
EST: AAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAG GCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGAEST: gi|58692816|gb|CK081503.1|CK081503
genomic: AAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAGgtaagaaatt ... tgtttggcagGCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGA
EST: AAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAG GCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGAEST: gi|29622743|gb|CB627754.1|CB627754
genomic: AAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAGgtaagaaatt ... tgtttggcagGCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGA
EST: AAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAG GCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGAEST: gi|88570132|gb|CI661307.1|CI661307
genomic: AAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAGgtaagaaatt ... tgtttggcagGCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGA
EST: AAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAG GCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGAEST: gi|58665449|gb|CK054135.1|CK054135
genomic: AAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAGgtaagaaatt ... tgtttggcagGCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGA
EST: ACAAGTCCAAG GCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGA
genomic: ACAAGTCCAAGgtaagaaatt ... tgtttggcagGCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGTTTCATCAGTGGACAAGAAGCTGGAAGTAAAACCACGTTTTTTGGAAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAGgtaagaaattagtccagtattctttcaaaagaacaccaatcatttcaagcataaatcatacgtgaaactgttttttatcaaatgtttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG