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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTCCCAGTATATGGAATTGCACTGTTTCTAATGATAGCTTTTGCTGTAATTCCGACGATTGGATCTAAgtaagttcttactgcacagcatgtactactttatgaattattttatattacctgtcagtttagtcatctatggactatggagcatatgaatccagcaagc...

Basic information

species Oryza sativa
transcript LOC_Os02g02750.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g02750.3 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G466281_T02 (Zea mays), 5'ss of exon 10
AGGTCCCAGTATATGGAATTGCACTGTTTCTAATGATAGCTTTTGCTGTAATTCCGACGATTGGATCTAAgtaagttcttactgcacagcatgtactacttt-atgaattattttatattacctgtcagttta-gtcatctatggactatggagcatatgaatccagcaagc---
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AAATCCCGGTGTATGACATTGTGCTATGTCTTATGATTGCTTTTGCTGTAATCCCAACAATTGGATCTAAgtaagtacagcatg-acaacatgtattactttcaagtggtattttgtgctacctggtgttccatatcattttt---ttgtatattatatgg-tcatgtaatctta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|2431249|gb|C73669.1|C73669
EST:     GCACTGTTTCTAATGATAGCTTTTGCTGTAATTCCGACGATTGGATCTAA                         CATTCACAATGTGTACAAAGTGGTCGAGGCAAGAAAAGG
genomic: GCACTGTTTCTAATGATAGCTTTTGCTGTAATTCCGACGATTGGATCTAAgtaagttctt ... aaacctacagCATTCACAATGTGTACAAAGTGGTCGAGGCAAGAAAAGG
EST: gi|33803550|gb|CF327650.1|CF327650
EST:     GCACTGTTTCTAATGATAGCTTTTGCTGTAATTCCGACGATTGGATCTAA                         CATTCACAATGTGTACAAAGTGGTCGAGGCAAGAAAAGGAAGCATGCTGCT
genomic: GCACTGTTTCTAATGATAGCTTTTGCTGTAATTCCGACGATTGGATCTAAgtaagttctt ... aaacctacagCATTCACAATGTGTACAAAGTGGTCGAGGCAAGAAAAGGAAGCATGCTGCT