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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCTTGCACATGGCACCACAACTGATTACATGTACGACATTGTAAAGGTGCCTATGCCCTTTACCTTTGAGgtcagttaatctgtttcctgaacagtcaattcccaagtttatgaagctgtattgaaactatagggatcaactcacattacttgtattcag

Basic information

species Oryza sativa
transcript LOC_Os02g02710.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g02710.4 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G006069_T02 (Zea mays), 5'ss of exon 8
GTATCTTGCACATGGCACCACAACTGATTACATGTACGACATTGTAAAGGTGCCTATGCCCTTTACCTTTGAGgtcagttaatctgtttcctgaacagtcaattcccaagtttatgaagctgtattgaaactatagggatcaactcacattacttgtattcag
 |||||||||||||| || ||||||||||||||||| ||||||| ||||||||| ||||| || ||||||||||||||||||||| ||  |      |  || ||||               | |    || | ||     | || || || ||  |||||||
ATATCTTGCACATGGTACAACAACTGATTACATGTATGACATTGCAAAGGTGCCAATGCCGTTCACCTTTGAGgtcagttaatctattgtc------gataactccc---------------tgtctggacaacagcacagagctgacgttgctgttattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218486846|gb|FG957896.1|FG957896
EST:     CTGATTACATGTACGACATTGTAAAGGTGCCTATGCCCTTTACCTTTGAG                         ATTTATGGTGATGAGAAAGCATCTACCAGCGATTGCTTCAAGATGTTCAAT
genomic: CTGATTACATGTACGACATTGTAAAGGTGCCTATGCCCTTTACCTTTGAGgtcagttaat ... ttgtattcagATTTATGGTGATGAGAAAGCATCTACCAGCGATTGCTTCAAGATGTTCAAT
EST: gi|58685947|gb|CK074634.1|CK074634
EST:     CTGATTACATGTACGACATTGTAAAGGTGCCTATGCCCTTTACCTTTGAG                         ATTTATGGTGATGAGAAAGCATCTACCAGCGATTGCTTCAAGATGTTCAAT
genomic: CTGATTACATGTACGACATTGTAAAGGTGCCTATGCCCTTTACCTTTGAGgtcagttaat ... ttgtattcagATTTATGGTGATGAGAAAGCATCTACCAGCGATTGCTTCAAGATGTTCAAT