1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGTCGGTCTTGATGTGTTTGAGGATGAGCCTTACATGAAGCCCGGCCTCGCTGACATGAAGAATGCCGTCGTCGTACCTCACATCGCATCTGCCTCCAAGgtccactacctgcctgctgcatctgcttatatatatatatatgcctagctagcttgttttattttctttctttctttctttcttcccataaaaatatcca...
species | Oryza sativa |
transcript | LOC_Os02g01150.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTGACATGAAGAATGCCGTCGTCGTACCTCACATCGCATCTGCCTCCAAG TGGACGCGCGAAGGAATGGCAACACTTGCTGCTCTAAACGTTCTTEST: gi|11442863|gb|BF430762.1|BF430762
genomic: CTGACATGAAGAATGCCGTCGTCGTACCTCACATCGCATCTGCCTCCAAGgtccactacc ... aattctccagTGGACGCGCGAAGGAATGGCAACACTTGCTGCTCTAAACGTTCTT
EST: CTGACATGAAGAATGCCGTCGTCGTACCTCACATCGCATCTGCCTCCAAG TGGACGCGCGAAGGAATGGCAACACTTGCTGCTCTAAACGTTCTTEST: gi|38471467|gb|CF955598.1|CF955598
genomic: CTGACATGAAGAATGCCGTCGTCGTACCTCACATCGCATCTGCCTCCAAGgtccactacc ... aattctccagTGGACGCGCGAAGGAATGGCAACACTTGCTGCTCTAAACGTTCTT
EST: CTGACATGAAGAATGCCGTCGTCGTACCTCACATCGCATCTGCCTCCAAG TGGACGCGCGAAGGAATGGCAACACTTGCTGCTCTAAACGTTCTTEST: gi|86906454|gb|CI294577.1|CI294577
genomic: CTGACATGAAGAATGCCGTCGTCGTACCTCACATCGCATCTGCCTCCAAGgtccactacc ... aattctccagTGGACGCGCGAAGGAATGGCAACACTTGCTGCTCTAAACGTTCTT
EST: CTGACATGAAGAATGCCGTCGTCGTACCTCACATCGCATCTGCCTCCAAG TGGACGCGCGAAEST: gi|38481826|gb|CF965897.1|CF965897
genomic: CTGACATGAAGAATGCCGTCGTCGTACCTCACATCGCATCTGCCTCCAAGgtccactacc ... aattctccagTGGACGCGCGAA
EST: CTGACATGAAGAATGCCGTCGTCGTACCTCACATCGCATCTGCCTCCAAG TGGACGCGCGAAGGAATGGCAACACTTGCTGCTCTAAACGTTCTTGGCAAG
genomic: CTGACATGAAGAATGCCGTCGTCGTACCTCACATCGCATCTGCCTCCAAGgtccactacc ... aattctccagTGGACGCGCGAAGGAATGGCAACACTTGCTGCTCTAAACGTTCTTGGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTCGGTCTTGATGTGTTTGAGGATGAGCCTTACATGAAGCCCGGCCTCGCTGACATGAAGAATGCCGTCGTCGTACCTCACATCGCATCTGCCTCCAAGgtccactacctgcctgctgcatctgcttatatatatatatatgcctagctagcttgttttattttctttctttctttctttcttcccataaaaatatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
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