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TCAAGAAATATCAGCTAGAAATCTCACAACCTGGTTTAGAGCCAGATCGGGGATTGACATGGCAGATGACCAAAAGAAGAGGGGATCACCAGGTTCACAAgtaagtggaagaactttcatctgtagctatagctgtatggtttgtgtcccttacaaacatgcatttttttataatgcatagtgattagtaaggttgagac...
species | Oryza sativa |
transcript | LOC_Os01g73970.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GGATTGACATGGCAGATGACCAAAAGAAGAGGGGATCACCAGGTTCACAA GGAGACAGAGGAGAGACCAGGCTGGTGCACTGATCCTCATCTTCCACCTTGEST: gi|58694661|gb|CK083348.1|CK083348
genomic: GGATTGACATGGCAGATGACCAAAAGAAGAGGGGATCACCAGGTTCACAAgtaagtggaa ... gtttttacagGGAGACAGAGGAGAGACCAGGCTGGTGCACTGACCCTCATCTTCCACCTTG
EST: GGATTGACATGGCAGATGACCAAAAGAAGAGGGGATCACCAGGTTCACAA GGAGACAGAGGAGAGACCAGGCTGGTGCACTGAGCCTCATCTTCCACCTTGEST: gi|29663566|gb|CB659841.1|CB659841
genomic: GGATTGACATGGCAGATGACCAAAAGAAGAGGGGATCACCAGGTTCACAAgtaagtggaa ... gtttttacagGGAGACAGAGGAGAGACCAGGCTGGTGCACTGACCCTCATCTTCCACCTTG
EST: GGATTGACATGGCAGATGACCAAAAGAAGAGGGGATCACCAGGTTCACAA GGAGACAGAGGAGAGACCAGGCTGGTGCACTGACCCTCATCTTCCACCTTGEST: gi|3760914|gb|C98168.1|C98168
genomic: GGATTGACATGGCAGATGACCAAAAGAAGAGGGGATCACCAGGTTCACAAgtaagtggaa ... gtttttacagGGAGACAGAGGAGAGACCAGGCTGGTGCACTGACCCTCATCTTCCACCTTG
EST: GATTGACATGGCAGATGCCCAAAAGAAAGAGGGGATCACCAGGTTCACAA GGAGACAGAGGAGAGACCAGGCTGGTGCACTGACCCTCATCTTCCACCTTGEST: gi|29641985|gb|CB646992.1|CB646992
genomic: GATTGACATGGCAGATGACCAAAAG-AAGAGGGGATCACCAGGTTCACAAgtaagtggaa ... gtttttacagGGAGACAGAGGAGAGACCAGGCTGGTGCACTGACCCTCATCTTCCACCTTG
EST: GGATTGACATGGCAGATGACCAAAAGAAGAGGGGATCACCAGGTTCACAA GGAGACAGAGGAGAGACCAGGCTGGTGCACTGACCCTCATCTTCCACCTTG
genomic: GGATTGACATGGCAGATGACCAAAAGAAGAGGGGATCACCAGGTTCACAAgtaagtggaa ... gtttttacagGGAGACAGAGGAGAGACCAGGCTGGTGCACTGACCCTCATCTTCCACCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAGAAATATCAGCTAGAAATCTCACAACCTGGTTTAGAGCCAGATCGGGGATTGACATGGCAGATGACCAAAAGAAGAGGGGATCACCAGGTTCACAAgtaagtggaagaactttcatctgtagctatagctgtatggtttgtgtcccttacaaacatgcatttttttataatgcatagtgattagtaaggttgagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG