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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCACTTATCATTCTTGAGAGAGAAAGCAGTTATATTGGGACTCTGATTGATGATCTTGTCACAAAAGATCTTAGGGAGCCTTATCGCATGTTAACAAGgtatgtttttttttctgtacgaatgctattagtatgatggttgtatttttcttttttagaaaatgcaggagaggtgtgtttcatttcattaagaaggaaa...

Basic information

species Oryza sativa
transcript LOC_Os01g72980.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g72980.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G481548_T01 (Zea mays), 5'ss of exon 9
AGCCACTTATCATTCTTGAGAGAGAAAGCAGTTATATTGGGACTCTGATTGATGATCTTGTCACAAAAGATCTTAGGGAGCCTTATCGCATGTTAACAAGgtatgtttttttttctgtacgaatgctattagtat-gatggttgtatttttcttttttagaaaatgcaggagaggtgtgtttcatttcattaagaaggaaa--
|  || | || ||||||||||| |||||||||||||| || ||||| |||||||||||||| |||||||||||||| ||||| ||||||||| ||||||||||||   ||||   | || ||    | ||| ||| |||| ||  |||  |    || | || |           | | |     | || ||   || ||   
AATCATTAATTATTCTTGAGAGGGAAAGCAGTTATATAGGAACTCTTATTGATGATCTTGTTACAAAAGATCTTAGAGAGCCCTATCGCATGCTAACAAGgtatggaattttag-tataaga-catttttattattgatgcttaaattactggcgttgaaaatacctttttttact-tctacttctacaatatatagtaagcc

upper sequence: LOC_Os01g72980.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G440344_T01 (Zea mays), 5'ss of exon 3
AGCCACTTATCATTCTTGAGAGAGAAAGCAGTTATATTGGGACTCTGATTGATGATCTTGTCACAAAAGATCTTAGGGAGCCTTATCGCATGTTAACAAGgtatgtttttttttctgtacgaatgctattagtat-gatggttgtatttttcttttttagaaaatgcaggagaggtgtgtttcatttcattaagaaggaaa-
|  || | || ||||||||||| |||||||||||||| |  ||||| |||||||||||||| |||||||||||||| ||||| ||||||||| ||||||||||||   ||||   | || ||    | ||| ||| |||| ||  |||  |    || | || |           |     |  |   ||  | |  | || 
AATCATTAATTATTCTTGAGAGGGAAAGCAGTTATATAGAAACTCTTATTGATGATCTTGTTACAAAAGATCTTAGAGAGCCCTATCGCATGCTAACAAGgtatggaattttag-tataaga-catttttattattgatgcttaaattactggcgttgaaaatacctttttttacttctacttctacaatatatatagtaag

upper sequence: LOC_Os01g72980.1 (Oryza sativa), 5'ss of exon 9
lower sequence: AT2G13440.1 (Arabidopsis thaliana), 5'ss of exon 9
AGCCACTTATCATTCTTGAGAGAGAAAGCAGTTATATTGGGACTCTGATTGATGATCTTGTCACAAAAGATCTTAGGGAGCCTTATCGCATGTTAACAAGgtatgtttttttttctgtacgaatgctattagtatgatggttgtatttttcttttttagaaaatgcaggagaggtgtgtttcatttcattaagaaggaaa--
||  ||   |  |||||||||| |||||||||||||| || ||  ||||||||||| | |||||||| ||||| || ||||| || |||||| |||||||||| |||   |||  |   |   |   ||||   | ||  |  |   ||  ||| |      ||| |  |    |    |  | ||  | ||  | |     
AGAAACACGTTGTTCTTGAGAGGGAAAGCAGTTATATAGGTACGTTGATTGATGATTTAGTCACAAAGGATCTCAGAGAGCCATACCGCATGCTAACAAGgtaagttccatttcgttctcttgt-tcattatcctaattctcctgcattcttttatactttcatg-atcaatcctccactctactttctgaaatatggtcag

upper sequence: LOC_Os01g72980.1 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv04s0044g01690.t01 (Vitis vinifera), 5'ss of exon 9
AGCCACTTATCATTCTTGAGAGAGAAAGCAGTTATATTGGGACTCTGATTGATGATCTTGTCACAAAAGATCTTAGGGAGCCTTATCGCATGTTAACAAGgta-tgtttttttttctgtacgaatgctattagtatgatggttgtatttttctttt-ttagaaaatgcaggagaggtgtgttt-catttcattaagaaggaaa
|  | || ||  |||||||||| ||||||||||| || |||||| |||| |||||||| || || ||||| ||| | ||||||||||| |||||||||||||| |||             |  |    | |  |   || || |  | |||      || | | ||  |  | ||  ||||   ||  |  || || |     
AATCCCTCATTGTTCTTGAGAGGGAAAGCAGTTACATAGGGACTTTGATAGATGATCTGGTTACCAAAGACCTTCGAGAGCCTTATCGAATGTTAACAAGgtaatgtggaaaacatatcgcttacataaatcttgatatagtagggtcttttggaagttggtagataaaaaatagtagtgtgcacaccttttttagtata---

upper sequence: LOC_Os01g72980.1 (Oryza sativa), 5'ss of exon 9
lower sequence: PP1S4_383V6.1 (Physcomitrella patens), 5'ss of exon 9
AGCCACTTATCATTCTTGAGAGAGAAAGCAGTTATATTGGGACTCTGATTGATGATCTTGTCACAAAAGATCTTAGGGAGCCTTATCGCATGTTAACAAGgtatgtttttttttctg-tacgaatgctattagtatgatggttgtatttttctttt---ttagaaaatgcaggagaggtgtgtttcatttcattaagaaggaaa
|| | ||  |  |  | ||| | || ||||| |  || || ||| |||| |||||||||||||| ||||||||  | |||||||| |||||| | |||||||  || ||| ||  ||  ||   || ||       | | ||  | ||  |  |     || |  ||   |      |  ||||     | | | |  ||    
AGTCGCTATTGGTGTTAGAGCGTGAGAGCAGCTTCATAGGAACTTTGATCGATGATCTTGTCACCAAAGATCTGCGCGAGCCTTACCGCATGCTCACAAGgttagtatttattgatgacacaggtgttaaccaagcgctagtgttgttggtgctcagagttggtgaacataatttctggatgttcatccttaatgacgag----