1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGCCCTGCCCATATCTATGCAACATCCATGTCACCTCCAGCTGTTCAGCAGGTCATTTCTGCAATAAAAGTTATCCTTGGTGAAGATGGATCTAACAGAGgtatatcagaacttgttgatttcttatttcttctgtctttaggaaattcctaatgtaattattgttctaaatag
species | Oryza sativa |
transcript | LOC_Os01g70380.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GATGGATCTAACAGAG GGNCCAAGAAGCTTGCTCAGATTCGAGAGAACAGCAATTTCTTCCGTTCAGEST: gi|27547517|gb|CA765770.2|CA765770
genomic: GATGGATCTAACAGAGgtatatcaga ... ttctaaatagGGGCCAAGAAGCTTGCTCAGATTCGAGAGAACAGCAATTTCTTCCGTTCAG
EST: TATCCTTGGTGAAGATGGATCTAACAGAG GGGCCAAGAAGCTTGCTCAGATTCGAGAGAACAGCAATTTCTTCCGTTCAGEST: gi|33795995|gb|CF323865.1|CF323865
genomic: TATCCTTGGTGAAGATGGATCTAACAGAGgtatatcaga ... ttctaaatagGGGCCAAGAAGCTTGCTCAGATTCGAGAGAACAGCAATTTCTTCCGTTCAG
EST: GGTCATTTCTGCAATAAAAGTTATCCTTGGTGAAGATGGATCTAACAGAG GGGCCAAGAAGCTTGCTCAGATTCGAGAGAACAGCAATTTCTTCCGTTCAGEST: gi|58606416|gb|CK034449.1|CK034449
genomic: GGTCATTTCTGCAATAAAAGTTATCCTTGGTGAAGATGGATCTAACAGAGgtatatcaga ... ttctaaatagGGGCCAAGAAGCTTGCTCAGATTCGAGAGAACAGCAATTTCTTCCGTTCAG
EST: GGTCATTTCTGCAATAAAAGTTATCCTTGGTGAAGATGGATCTAACAGAG GGGCCAAGAAGCTTGCTCAGATTCGAGAGAACAGCAATTTCTTCCGTTCAG
genomic: GGTCATTTCTGCAATAAAAGTTATCCTTGGTGAAGATGGATCTAACAGAGgtatatcaga ... ttctaaatagGGGCCAAGAAGCTTGCTCAGATTCGAGAGAACAGCAATTTCTTCCGTTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCCTGCCCATATCTATGCAACATCCATGTCACCTCCAGCTGTTCAGCAGGTCATTTCTGCAATAAAAGTTATCCTTGGTGAAGATGGATCTAACAGAGgtatatcagaacttgttgatttcttatttcttctgtctttaggaaattcctaatgtaattattgttctaaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA