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AATGGAGGGAAAGATTGACTCCATGAGAATCTTAGACAACTCAAATCCTCAGAAGCCAGTAGTGCGCATGGCAAATTTGTGCGTAGTGTCTGCCCATACGgtaagtgcagttatttgtgtttgatgctcaatgttctataacctttttcacaacacaactattcatcatgtccattctaatggaaactaccttgaccatc...
species | Oryza sativa |
transcript | LOC_Os01g63270.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGAAGCCAGTAGTGCGCATGGCAAATTTGTGCGTAGTGTCTGCCCATACG GTGAATGGAGTGGCTGAGTTACACAGCAACATTTTGAAGGAAGAGCTTTTTEST: gi|29635801|gb|CB640810.1|CB640810
genomic: AGAAGCCAGTAGTGCGCATGGCAAATTTGTGCGTAGTGTCTGCCCATACGgtaagtgcag ... ctctccacagGTGAATGGAGTGGCTGAGTTACACAGCAACATTTTGAAGGAAGAGCTTTTT
EST: AGAAGCCAGTAGTGCGCATGGCAAATTTGTGCGTAGTGTCTGCCCATACG GTGAATGGAGTGGCTGAGTT-CACAGCAACATTTTGAAGGAAGAGCTTTTTEST: gi|58610009|gb|CK038042.1|CK038042
genomic: AGAAGCCAGTAGTGCGCATGGCAAATTTGTGCGTAGTGTCTGCCCATACGgtaagtgcag ... ctctccacagGTGAATGGAGTGGCTGAGTTACACAGCAACATTTTGAAGGAAGAGCTTTTT
EST: AGAAGCCAGTAGTGCGCATGGCAAATTTGTGCGTAGTGTCTGCCCATACG GTGAATGGAGTGGCTGAGTTACACAGCAACATTTTGAAGGAAGAGCTTTTTEST: gi|58688682|gb|CK077369.1|CK077369
genomic: AGAAGCCAGTAGTGCGCATGGCAAATTTGTGCGTAGTGTCTGCCCATACGgtaagtgcag ... ctctccacagGTGAATGGAGTGGCTGAGTTACACAGCAACATTTTGAAGGAAGAGCTTTTT
EST: AGAAGCCAGTAGTGCGCATGGCAAATTTGTGCGTAGTGTCTGCCCATACG GTGAATGGAGTGGCTGAGTTACACAGCAACATTTTGAAGGAAGAGCTTTTTEST: gi|29623647|gb|CB628658.1|CB628658
genomic: AGAAGCCAGTAGTGCGCATGGCAAATTTGTGCGTAGTGTCTGCCCATACGgtaagtgcag ... ctctccacagGTGAATGGAGTGGCTGAGTTACACAGCAACATTTTGAAGGAAGAGCTTTTT
EST: AGAAGCCAGTAGTGCGCATGGCAAATTTGTGCGTAGTGTCTGCCCATACG GTGAATGGAGTGGCTGAGTTACACAGCAACATTTTGAAGGAAGAGCTTTTT
genomic: AGAAGCCAGTAGTGCGCATGGCAAATTTGTGCGTAGTGTCTGCCCATACGgtaagtgcag ... ctctccacagGTGAATGGAGTGGCTGAGTTACACAGCAACATTTTGAAGGAAGAGCTTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGAGGGAAAGATTGACTCCATGAGAATCTTAGACAACTCAAATCCTCAGAAGCCAGTAGTGCGCATGGCAAATTTGTGCGTAGTGTCTGCCCATACGgtaagtgcagttatttgtgtttgatgctcaatgttctataacctttttcacaacacaactattcatcatgtccattctaatggaaactaccttgaccatc
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