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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCAGGAATTGGCACAAGCATTGACTCATTCTATGAGTATCTTCTAAAGgtaaggaatccactgtattatagcattgcatatttcagaccttgtatatttcagaactgttacatacatgtactataataaacaggtttttttttgtcta...

Basic information

species Oryza sativa
transcript LOC_Os01g56670.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g56670.3 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G173868_T02 (Zea mays), 5'ss of exon 9
GATGCAGGAATTGGCACAAGCATTGACTCATTCTATGAGTATCTTCTAAAGgtaaggaat-ccactgtattatagcattgcatatttcagaccttgtatatttcagaactgttacatacatgtactataataaacaggtttttttttgtcta-----
|||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||  ||||| | || ||  |||              ||||  ||  |||  |  |   ||| || |  |   ||      |||||||       |     
GATGCAGGAATTGGCACAAGCATTGATTCATTCTATGAATATCTTCTAAAGgcaaggaaagccactatgtt-tattatttttggcgctcatatttgttcatcccagtgcc-tcgaata-atttcttcctat---tttgttttttaaaactcacattc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88361880|gb|CI682051.1|CI682051
EST:     ATGCAGGAATTGGCACAAGCATTGACTCATTCTATGAGTATCTTCTAAAG                         GAGGCTTACAAGGCTGCCATGCATTATCTCCATCATGATCCCTG
genomic: ATGCAGGAATTGGCACAAGCATTGACTCATTCTATGAGTATCTTCTAAAGgtaaggaatc ... tatatttcagGAGGCTTACAAGGCTGCCATGCATTATCTCCATCATGATCCCTG
EST: gi|88394177|gb|CI684850.1|CI684850
EST:     ATGCAGGAATTGGCACAAGCATTGACTCATTCTATGAGTATCTTCTAAAG                         GAGGCTTACAAGGCTGCCATGCATTATCTCCATCATGATCCCTG
genomic: ATGCAGGAATTGGCACAAGCATTGACTCATTCTATGAGTATCTTCTAAAGgtaaggaatc ... tatatttcagGAGGCTTACAAGGCTGCCATGCATTATCTCCATCATGATCCCTG