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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTCAGGGTTGAAAGTCAACTTAAGCTTGTAATTAGGCCTATGTATTCAAACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattgatgtcataataattctagtcaaccatagaaagtgagctatatgttgagaaaggcatgcctagaggcagattcagggaataaaagtgtgtgctaagttctttttgattatatttttactag

Basic information

species Oryza sativa
transcript LOC_Os01g55540.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g55540.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G094712_T04 (Zea mays), 5'ss of exon 7
CTGTCAGGGTTGAAAGTCAACTTAAGCTTGTAATTAGGCCTATGTATTCAAACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattgatgtcataataattctagtcaaccatagaaagtgagctatatgttgagaaaggcatgcctagaggcagattcagg--gaataaaagtgtgtgctaagttctttttgattatatttttactag
|||| ||||||||||||||||| || ||||| || |||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| | ||||||||| ||||  ||  ||   ||| | |   |  || ||   ||| |            | ||  || |  || ||    |||  |  || | |   | | |  ||| |||                      
CTGTTAGGGTTGAAAGTCAACTCAAACTTGTCATCAGGCCTATGTATTCAAACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattcttgctattgcaatgcca--tattcagag---gtgggtcc--------aagagttatacaaagtggttacttcctgttgattgattctatttattaacttccag-------------------

upper sequence: LOC_Os01g55540.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA04G08560.1 (Glycine max), 5'ss of exon 9
CTGTCAGGGTTGAAAGTCAACTTAAGCTTGTAATTAGGCCTATGTATTCAAACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattgatgtcataataattctagtcaaccatagaaagtgagctatatgttgagaaaggcatgcctagaggcagattcagggaataaaagtgtgtgctaagttctttttgattatatttttactag
|   |||||| || || || || || || || |||||||| ||||| ||||  |||||||||||||||||||| || |||||| |||| || |||||| |||||   ||| | || | |  | |||  |||  |  ||      |||   | |      |  | | ||     ||   ||          |  ||  | |||   |                       
CAAGCAGGGTCGAGAGCCAGCTGAAACTAGTGATTAGGCCCATGTACTCAAGTCCTCCTATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaa---tga-gccaaacttctgctacacaaagaaggatttgttgctgactatcttattattctttccccactgcttttttttttctctga--tgaatactagtct-----------------------

upper sequence: LOC_Os01g55540.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA06G08670.1 (Glycine max), 5'ss of exon 9
CTGTCAGGGTTGAAAGTCAACTTAAGCTTGTAATTAGGCCTATGTATTCAAACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattgatgtcataataattctagtcaaccatagaaagtgagctatatgttgagaaaggcatgcctagaggcagattcagggaataaaagtgtgtgctaagttctttttgattatatttttactag
|   ||||||||| || || || ||||| || |||||||| ||||| ||||  ||||| |||||||||||||| || |||||| |||| || |||||| |||||   |||       |   ||||  |   | |    |  ||| ||| |     |||| |   ||  |   | |    |       ||  | | | | |  | ||||||||  |   ||         
CAAGCAGGGTTGAGAGCCAGCTGAAGCTAGTGATTAGGCCCATGTACTCAAGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaa---tga----gccaagcttctgctttccta----agatgaactacaca--aagaaggatttgt-tgttgactatct-------tattattctttccccacttcttttttttctgatg--------

upper sequence: LOC_Os01g55540.2 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv04s0008g03770.t01 (Vitis vinifera), 5'ss of exon 9
CTGTCAGGGTTGAAAGTCAACTTAAGCTTGTAATTAGGCCTATGTATTCAAACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattgatgtcataataattctagtcaaccatagaaagtgagctatatgttgagaaaggcatgcctagaggcagattcagggaataaaagtgtgtgctaagttctttttgattatatttttactag
|   ||||||||| || ||  |||| ||||| || |||||||||| ||||||||| || |||||||||||||||||||| || | ||| || ||  |||||||    | | || ||   ||  || |||||  ||      || |  || ||   | ||   | ||  ||  |||||| ||  |   |     |   |  |   |||||                    
CAAGCAGGGTTGAGAGCCAGGTTAAACTTGTGATCAGGCCTATGTTTTCAAACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAGgta----ttaagttattcaaaacct-gtcaaggatttgct-tgtgtaatttggcaaaaaccacttga-tattggcagaatcctgctcttt--tttcattttcccttctt--------------------

upper sequence: LOC_Os01g55540.2 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv11s0016g03720.t01 (Vitis vinifera), 5'ss of exon 9
CTGTCAGGGTTGAAAGTCAACTTAAGCTTGTAATTAGGCCTATGTATTCAAACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgta-acattgatgtcataataattctagtcaaccatagaaagtgagctatatgttg-agaaaggcatgcctagaggcagattcagggaataaaagtgtgtgctaagttctttttgattatatttttactag
|   ||||||||| || || || || ||||| || ||||| |||||||| || || |||||||||||||||||||| |||||||| || || ||||||||||| | |||  |   |   ||    |  |  |  |||  ||   | |   | |||| |   |       ||| ||   |||    |    || | |     |                             
CAAGCAGGGTTGAGAGCCAGCTGAAACTTGTGATCAGGCCCATGTATTCCAATCCCCCTATTCATGGTGCATCTATTGTGGCTACAATCCTCAAGGACAGgtataaatttgttcaaccttagagtttatgta--atatgaatccaacatgaagttgtactgaaattccactatagatggatgtcagagtaaagactacaaac-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86425177|gb|CI070274.1|CI070274
EST:     ATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: ATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|15849628|gb|BI797904.1|BI797904
EST:     TTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         T-CAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: TTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|58607107|gb|CK035140.1|CK035140
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCACCCTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|58669926|gb|CK058612.1|CK058612
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|10931117|gb|AU161391.1|AU161391
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|29639572|gb|CB644581.1|CB644581
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTCCCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|86505956|gb|CI148589.1|CI148589
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|89175420|gb|CI042441.1|CI042441
EST:     TACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: TACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|33797134|gb|CF324432.1|CF324432
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|427483|gb|D23550.1|D23550
EST:     CTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: CTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|58600573|gb|CK011101.1|CK011101
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|116874986|gb|EC365494.1|EC365494
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|22307371|gb|BQ908593.1|BQ908593
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|88261851|gb|CI365427.1|CI365427
EST:     CTACCATAC-TAA-GACAG                         TCCAATGTTCAATGAAT-GACTGTGGAGCTGAA-GGCATGGCTGATAGGAT
genomic: CTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|88245716|gb|CI245565.1|CI245565
EST:     CTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: CTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|86512169|gb|CI154802.1|CI154802
EST:     TCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: TCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|89182575|gb|CI113944.1|CI113944
EST:     CATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: CATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|24468782|gb|CA305731.1|CA305731
EST:     CTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: CTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|88248072|gb|CI246690.1|CI246690
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|218498466|gb|FG951779.1|FG951779
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|218496561|gb|FG955449.1|FG955449
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|3760299|gb|C97555.1|C97555
EST:     ACCCTCCTATTCCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: ACCCTCCTATT-CATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|58596195|gb|CK006723.1|CK006723
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|89180993|gb|CI045076.1|CI045076
EST:     CTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: CTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|86479024|gb|CI121657.1|CI121657
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|86539977|gb|CI180183.1|CI180183
EST:     TGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: TGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|86854770|gb|CI259056.1|CI259056
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|86435549|gb|CI106782.1|CI106782
EST:     ATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: ATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|29679666|gb|CB675941.1|CB675941
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|8527496|gb|AU092311.1|AU092311
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|218496988|gb|FG950831.1|FG950831
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|27577125|gb|CA999819.1|CA999819
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|86261505|gb|CI017247.1|CI017247
EST:     CTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: CTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|86492033|gb|CI134666.1|CI134666
EST:     ATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: ATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|218495829|gb|FG948903.1|FG948903
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|89173519|gb|CI041412.1|CI041412
EST:     CTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: CTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|218491933|gb|FG950038.1|FG950038
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|88962646|gb|CI023746.1|CI023746
EST:     ATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: ATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|396941430|gb|HO188639.1|HO188639
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|88964173|gb|CI045366.1|CI045366
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|218483046|gb|FG954663.1|FG954663
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|89188022|gb|CI115271.1|CI115271
EST:     CGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: CGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|27554109|gb|CA998009.1|CA998009
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|33796812|gb|CF324273.1|CF324273
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|58612361|gb|CK040073.1|CK040073
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGACAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGATGATAGGA
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTG-CAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGA
EST: gi|89179932|gb|CI044211.1|CI044211
EST:     CCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: CCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|88906202|gb|CI375274.1|CI375274
EST:     TATCCTGGCTACCA-AC-TAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: TATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|29660056|gb|CB656331.1|CB656331
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|86595031|gb|CI260270.1|CI260270
EST:     GTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: GTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|218487158|gb|FG950553.1|FG950553
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|88219927|gb|CI219487.1|CI219487
EST:     TATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: TATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|29658838|gb|CB655113.1|CB655113
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|88247456|gb|CI247305.1|CI247305
EST:     CCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: CCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|58664098|gb|CK052784.1|CK052784
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|14571421|gb|BI118789.1|BI118789
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|2443117|gb|C74888.1|C74888
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCA
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCA
EST: gi|86539650|gb|CI179856.1|CI179856
EST:     ACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: ACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 62 (downstream exon)
Score: 144

CTGTCAGGGTTGAAAGTCAACTTAAGCTTGTAATTAGGCCTATGTATTCAAACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGATTATTAGCATGAGGCAACAGCTTTTTGATGCTCTGAAAACGAGAG




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