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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTAGTACTTTTTGAGTTAATATCTGGAAAGGAGGCAATTACAAGGACTGATGGATTGAACGAAGGATCAAACTCAGAAAGGCGTTCCTTGGCATCAGTTgtaagttttctaggttcagcataagcaattgaacatatatgcccattataacttacgggcttagaattattttgccatcccaagttgcagtgtttttcactggctttattgaagttttagtatattttacttgctattttgactccaaaagttttgaactaatttagttttaacaatgcag

Basic information

species Oryza sativa
transcript LOC_Os01g53840.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g53840.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G159105_T01 (Zea mays), 5'ss of exon 8
AGTAGTACTTTTTGAGTTAATATCTGGAAAGGAGGCAATTACAAGGACTGATGGATTGAACGAAGGATCAAACTCAGAAAGGCGTTCCTTGGCATCAGTTgtaagttttctaggttcagcataagcaattgaacatatatgcccattataacttacgggcttagaattattttgccatcccaagttgca--gtgtttttcactggctttattgaagttttagtatattttacttgctattttgactccaaaagttttgaactaatttagtttta-acaatgcag
 || |||||||||||| ||||||||||||||||||| ||||||||  |||| ||| ||   | | | |||||||| ||  |  | ||  ||||||||||||||||||| |   ||||||     | | ||||   | |   |   || || |||  ||  |||  ||||||||  |||   |||| |||  |   || |      |||| || || ||    |  ||||   ||  |||||  ||||||||||| || | | | ||| ||| |  ||   ||||
TGTGGTACTTTTTGAGCTAATATCTGGAAAGGAGGCGATTACAAGAGCTGAAGGAATGGGTGCAAGCTCAAACTCCGAGCGATGCTCACTGGCATCAGTTgtaagtttcc--agttcagtg---gtagttgactttct---catgttgtacctttaggctttaccattattttaacattg-aagtagcatagaacttctgttgaactttgttcaatttcctattcatttgtttt--tattt--actccaaaagtcttaagcaactttggttatgtactccgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|3763556|gb|AU030308.1|AU030308
EST:     ACTCAGAAAGGCGTTCCTTGGCATCAGTT                         ATGTTGAGTGCACTAAAGAATTGTCGTAACTCAATGTATATGGGGAGCCTG
genomic: ACTCAGAAAGGCGTTCCTTGGCATCAGTTgtaagttttc ... aacaatgcagATGTTGAGTGCACTAAAGAATTGTCGTAACTCAATGTATATGGGGAGCCTG