1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGCCCAAATTTTGCTTCCAAGGCTGTGGATTTGGCAGCAGGAGAGCTTCTTGAGGTTGCAACTCCTGGAAAAGgtttgcttcttatttgacatattggatatttataaggaccatgcccatatatattttcctcatggctgtattttttgtgtag
species | Oryza sativa |
transcript | LOC_Os01g53700.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGTGGATTTGGCAGCAGGAGAGCTTCTTGAGGTTGCAACTCCTGGAAAAG TTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTTEST: gi|89191950|gb|CI250891.1|CI250891
genomic: TGTGGATTTGGCAGCAGGAGAGCTTCTTGAGGTTGCAACTCCTGGAAAAGgtttgcttct ... ttttgtgtagTTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTT
EST: TGTGGATTTGGCAGCAGGAGAGCTTCTTGAGGTTGCAACTCCTGGAAAAG TTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTTEST: gi|89166280|gb|CI103370.1|CI103370
genomic: TGTGGATTTGGCAGCAGGAGAGCTTCTTGAGGTTGCAACTCCTGGAAAAGgtttgcttct ... ttttgtgtagTTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTT
EST: TTTGGCAGCAGGAGAGCTTCTTGAGGTTGCAACTCCTGGAAAAG TTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTTEST: gi|5701695|gb|AU063482.2|AU063482
genomic: TTTGGCAGCAGGAGAGCTTCTTGAGGTTGCAACTCCTGGAAAAGgtttgcttct ... ttttgtgtagTTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTT
EST: GCAGGAGAGCTTCTTGAGGTTGCAACTCCTGGAAAAG TTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTTEST: gi|86893269|gb|CI313403.1|CI313403
genomic: GCAGGAGAGCTTCTTGAGGTTGCAACTCCTGGAAAAGgtttgcttct ... ttttgtgtagTTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTT
EST: TGTGGATTT-GCACCAGGAGAGCTTCTGGAGGTGGCAACTCCTGGAAAAG TTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTTEST: gi|86593940|gb|CI260169.1|CI260169
genomic: TGTGGATTTGGCAGCAGGAGAGCTTCTTGAGGTTGCAACTCCTGGAAAAGgtttgcttct ... ttttgtgtagTTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTT
EST: GTGGATTTGGCAGCAGGAGAGCTTCTTGAGGTTGCAACTCCCTGGAAAAG TTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTTEST: gi|38475250|gb|CF959383.1|CF959383
genomic: GTGGATTTGGCAGCAGGAGAGCTTCTTGAGGTTGCAACT-CCTGGAAAAGgtttgcttct ... ttttgtgtagTTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTT
EST: TGTGGATTTGGCAGCAGGAGAGCTTCTTGAGGTTGCAACTCCTGGAAAAG TTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTTEST: gi|9864980|gb|AU100730.1|AU100730
genomic: TGTGGATTTGGCAGCAGGAGAGCTTCTTGAGGTTGCAACTCCTGGAAAAGgtttgcttct ... ttttgtgtagTTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTT
EST: TGTGGATTTGGCAGCAGGAGAGCTTCTTGAGGTTGCAACTCCTGGAAAAG TTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTTEST: gi|58690219|gb|CK078906.1|CK078906
genomic: TGTGGATTTGGCAGCAGGAGAGCTTCTTGAGGTTGCAACTCCTGGAAAAGgtttgcttct ... ttttgtgtagTTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTT
EST: TGTGGATTTGGCAGCAGGAGAGCTTCTTGAGGTTGCAACTCCTGGAAAAG TTACACAAGAACAGCTTGATCGAGCTAAAEST: gi|87021256|gb|CI295315.1|CI295315
genomic: TGTGGATTTGGCAGCAGGAGAGCTTCTTGAGGTTGCAACTCCTGGAAAAGgtttgcttct ... ttttgtgtagTTACACAAGAACAGCTTGATCGAGCTAAA
EST: TGTGGATTTGGCAGCAGGAGAGCTTCTTGAGGTTGCAACTCCTGGAAAAG TTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTTEST: gi|58597827|gb|CK008355.1|CK008355
genomic: TGTGGATTTGGCAGCAGGAGAGCTTCTTGAGGTTGCAACTCCTGGAAAAGgtttgcttct ... ttttgtgtagTTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTT
EST: ACTCCTGGAAAAG TTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTTEST: gi|163920798|gb|EG710061.1|EG710061
genomic: ACTCCTGGAAAAGgtttgcttct ... ttttgtgtagTTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTT
EST: TGTGGATTTGGCAGCAGGAGAGCTTCTTGAGGTTGCAACTCCTGGAAAAG TTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTT
genomic: TGTGGATTTGGCAGCAGGAGAGCTTCTTGAGGTTGCAACTCCTGGAAAAGgtttgcttct ... ttttgtgtagTTACACAAGAACAGCTTGATCGAGCTAAACAGGCAACCAAGTCTGCAGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCCAAATTTTGCTTCCAAGGCTGTGGATTTGGCAGCAGGAGAGCTTCTTGAGGTTGCAACTCCTGGAAAAGgtttgcttcttatttgacatattggatatttataaggaccatgcccatatatattttcctcatggctgtattttttgtgtag
- - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - GAGCTT