1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAAGGCTTGCGCATCCTGTGACAAAACCGGAGATGGAAATGAGGTACTCTTCTCGGGGAACTCATTGCTGATTCCTTGCGGTGGATCATCTTGTCTCGAGgtttgtattccagcttacaggttacgaatatgtttctttccttgtggccttctccaagttcactctgatgttgtatggttag
species | Oryza sativa |
transcript | LOC_Os01g49330.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGGATCATCTTGTCTCGAG GTCGTGGAGCTTCAACTCCCT-GAAAGAAGGGGACGACAGCAA-GGACTTCEST: gi|88471993|gb|CI409264.1|CI409264
genomic: TGGATCATCTTGTCTCGAGgtttgtattc ... gtatggttagGTCGTGGAGCTTCAACTCCCTGGAAAGAAGGTGACGACAGCAAGGGACTTC
EST: TCTCGGGGAACTCATTGCTGATTCCTTGCGGTGGATCATCTTGTCTCGAG GTCGTGGAGCTTCAACTCCCTGGAAAGAAGGTGACGACAGCAAGGGACTTCEST: gi|88281072|gb|CI402270.1|CI402270
genomic: TCTCGGGGAACTCATTGCTGATTCCTTGCGGTGGATCATCTTGTCTCGAGgtttgtattc ... gtatggttagGTCGTGGAGCTTCAACTCCCTGGAAAGAAGGTGACGACAGCAAGGGACTTC
EST: TCTCGGGGAACTCATTGCTGATTCCTTGCGGTGGATCATCTTGTCTCGAG GTCGTGGAGCTTCAACTCCCTGGAAAGAAGGTGACGACAGCAAGGGACTTC
genomic: TCTCGGGGAACTCATTGCTGATTCCTTGCGGTGGATCATCTTGTCTCGAGgtttgtattc ... gtatggttagGTCGTGGAGCTTCAACTCCCTGGAAAGAAGGTGACGACAGCAAGGGACTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGGCTTGCGCATCCTGTGACAAAACCGGAGATGGAAATGAGGTACTCTTCTCGGGGAACTCATTGCTGATTCCTTGCGGTGGATCATCTTGTCTCGAGgtttgtattccagcttacaggttacgaatatgtttctttccttgtggccttctccaagttcactctgatgttgtatggttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA