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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGAGCTTTTGCTGAAGCTTCTATGACAACTGCTTATGAGAAGAAATGGCCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatttttgcacatttgcacctactatttattcaaatcttggtttatgtatccaggctatgattgtgtatctgactaatcttttcaggtgacatatataactggtgtaatatttttttgatgatgcag

Basic information

species Oryza sativa
transcript LOC_Os01g46610.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g46610.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G432128_T01 (Zea mays), 5'ss of exon 9
TCCGAGCTTTTGCTGAAGCTTCTATGACAACTGCTTATGAGAAGAAATGGCCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagt-acatttttgcacatttgcacctactatttattcaaatcttggtttatgtatccaggctatgattgtgtatctgactaatcttttcaggtgacatatataactggtgtaatatttttttgatgatgcag
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||||||| ||||  | |||| |||  |   |   |  |||  |||  |   ||  | |   ||   |||    ||||  ||||| | | | |    |||| |  |    ||| | |||  || |                    
TCCGAGCTTTTGCTGAGGCTTCTATGACAACTGCTTATGAGAAGAAATGGCCACTCTACCTTAGCACCAAAAACACAATCCTGAAAAAATATGATGGCAGgtgattacatctttatatgctcttat-taccttttgcttgtattatagacaattggtccta--tatgtatgtgtgtgt-atttccgttttgatat----tatgtgactt-tgcag-------------------

upper sequence: LOC_Os01g46610.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G033515_T01 (Zea mays), 5'ss of exon 9
TCCGAGCTTTTGCTGAAGCTTCTATGACAACTGCTTATGAGAAGAAATGGCCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatttttgcacatttgcacctactatttattcaaatcttggtttatgtatccaggctatgattgtgtatctgactaatcttttcaggtgacatatataactggtgtaatatttttttgatgatgcag
| ||||||||||| | |||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||         || || ||||  |    ||  ||||   |  ||||  || |  |       |   ||| | ||  ||  |  | || | |  |   |||| ||  || | |  ||                 
TTCGAGCTTTTGCCGCAGCTTCTATGACAACTGCATATGAGAAGAAATGGCCGCTCTACCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGCAGgtg-------cttacatatttatatgctcttattatctgatgcttgtgttgtagac---aattggtattttatacgtgtttg-tgttgtgatattctatatttatgtgatcttgtag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29675350|gb|CB671625.1|CB671625
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GGTTCA-GGATATTTTCCAGGAGGTCTATGAAGCTG
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagG-TTCAAGGATATTTTCCAGGAGGTCTATGAAGCTG
EST: gi|58665596|gb|CK054282.1|CK054282
EST:     CAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|58681851|gb|CK070538.1|CK070538
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|58685196|gb|CK073883.1|CK073883
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGA
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGA
EST: gi|29643695|gb|CB648702.1|CB648702
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAG
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAG
EST: gi|58586908|gb|CF985216.1|CF985216
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|55408933|gb|CV721309.1|CV721309
EST:     GCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: GCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|58601771|gb|CK012299.1|CK012299
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|22546869|gb|BU099180.1|BU099180
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTN
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|29681045|gb|CB677320.1|CB677320
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCT
EST: gi|2310583|gb|C26738.1|C26738
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|33796466|gb|CF324100.1|CF324100
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|58591977|gb|CF990285.1|CF990285
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|163925810|gb|EG714934.1|EG714934
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|58668052|gb|CK056738.1|CK056738
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAACTATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|33676653|gb|CF304892.1|CF304892
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|33795162|gb|CF323454.1|CF323454
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|58678891|gb|CK067578.1|CK067578
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|29612963|gb|CB617976.1|CB617976
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|33676140|gb|CF304379.1|CF304379
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|58600685|gb|CK011213.1|CK011213
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|27576994|gb|CA999688.1|CA999688
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|29612961|gb|CB617974.1|CB617974
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAA
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAA
EST: gi|58587829|gb|CF986137.1|CF986137
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|58682904|gb|CK071591.1|CK071591
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|109974759|gb|DT807089.1|DT807089
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|29663182|gb|CB659457.1|CB659457
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGATATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|33796234|gb|CF323983.1|CF323983
EST:     CGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATNGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGT
genomic: CGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATAT-GATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGT
EST: gi|29671744|gb|CB668019.1|CB668019
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTT
EST: gi|58662619|gb|CK051305.1|CK051305
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|58601500|gb|CK012028.1|CK012028
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|58675276|gb|CK063963.1|CK063963
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|33676517|gb|CF304756.1|CF304756
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|33676366|gb|CF304605.1|CF304605
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|426263|gb|D22124.1|D22124
EST:     CTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|58681694|gb|CK070381.1|CK070381
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|11442840|gb|BF430739.1|BF430739
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|33676128|gb|CF304367.1|CF304367
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|29674012|gb|CB670287.1|CB670287
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GGTTCA-GGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagG-TTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGT
EST: gi|163927556|gb|EG709964.1|EG709964
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|27577341|gb|CB000036.1|CB000036
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|117251413|gb|CT844156.1|CT844156
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|88743066|gb|CI766574.1|CI766574
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|33680077|gb|CF308316.1|CF308316
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
EST: gi|58681524|gb|CK070211.1|CK070211
EST:     CCGGTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAG
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAG
EST: gi|29642812|gb|CB647819.1|CB647819
EST:     CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAG                         GTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT
genomic: CCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 54 (downstream exon)
Score: 259

TCCGAGCTTTTGCTGAAGCTTCTATGACAACTGCTTATGAGAAGAAATGGCCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatt ... gatgatgcagGTTCAAGGATATTTTCCAGGAGGTCTATGAAGCTGGGTGGAAATCCAAGTTTGAGGCTGCCGGAATATG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCGAGCTTTTGCTGAAGCTTCTATGACAACTGCTTATGAGAAGAAATGGCCGCTTTATCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGAAGgtagtacatttttgcacatttgcacctactatttattcaaatcttggtttatgtatccaggctatgattgtgtatctgactaatcttttcaggtgacatatataactggtgtaatatttttttgatgatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG