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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCAGTACCTAAACTTGCTTGCCATAGTGTTGCATCGTGGTGTCATCCTCGTGCACCAAACCTTGATATTCTGACTTGTGTCAAGGACTCCCATATATGgtatgttcctgactttggaaggaaatatcaagctatagatattttatagtgctttcaagtttcaataatgacttacctctctgatccctcttttgttttgtgttacag

Basic information

species Oryza sativa
transcript LOC_Os01g46510.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g46510.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G000177_T01 (Zea mays), 5'ss of exon 9
AACCAGTACCTAAACTTGCTTGCCATAGTGTTGCATCGTGGTGTCATCCTCGTGCACCAAACCTTGATATTCTGACTTGTGTCAAGGACTCCCATATATGgtatgt-tcctgactttggaaggaaatatcaagctatagatattt-tatagtgctttcaagtttcaataatgacttacctctctgatccctcttttgttttgtgttacag
| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |     || |  |  || |||| | | |  |||| ||| | || ||        |    || ||  ||||   | ||| ||  |  | | ||     ||||||
AGCCAGTGCCTAAACTTGCTTGTCATAGTGTTGCATCGTGGTGTCATCCCCGTGCACCAAACCTTGATATTCTAACTTGTGTCAAGGACTCCCATATTTGgtatgtatttctgctctccagagacatatta-gttgcagatttttctctaatg-------atgctcattatagcttattgcactgttctatactctatt----attacag

upper sequence: LOC_Os01g46510.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA19G41130.1 (Glycine max), 5'ss of exon 9
AACCAGTACCTAAACTTGCTTGCCATAGTGTTGCATCGTGGTGTCATCCTCGTGCACCAAACCTTGATATTCTGACTTGTGTCAAGGACTCCCATATATGgtatgttcctgactttggaa---ggaaatatcaagctatagatatttt-------atagtgctttcaagt--ttcaataatgacttacctctctgatccctcttttgttttgtgttacag
| ||||| || ||| | |||||||| ||||| || || ||||| |||||||| || ||||||||||||||||| ||||| ||||| || || || |||||||||||      ||||   |   ||     | ||| | |  |||||||       ||| ||    || |   |  | | || |  ||| |     ||     ||    ||| |||||   
AGCCAGTTCCCAAATTGGCTTGCCACAGTGTGGCTTCTTGGTGCCATCCTCGAGCTCCAAACCTTGATATTCTAACTTGCGTCAAAGATTCTCACATATGgtatgtagtcttctttctcatttggtggctttaagttttttatattttttatttgataatgtggccatgcactatattcattatatacataaagaattttaattgaaatttttgttag--

upper sequence: LOC_Os01g46510.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA03G38530.1 (Glycine max), 5'ss of exon 9
AACCAGTACCTAAACTTGCTTGCCATAGTGTTGCATCGTGGTGTCATCCTCGTGCACCAAACCTTGATATTCTGACTTGTGTCAAGGACTCCCATATATGgtatgt-------tcctgactttggaag---gaaatatcaagctatagatattttatagtgctttcaagt--ttcaataatgacttacctctctgatccctcttttgttttgtgttacag
| ||||| || ||| | |||||||| ||||| || || |||||||||||||| || ||||||||||||||||| ||||| ||||| || || || |||||||||||       |     ||||||  |    || | ||      |   ||||| ||||||    || |   |  | | || |  ||  |     ||     ||||  ||| |||||   
AGCCAGTTCCCAAATTGGCTTGCCACAGTGTGGCTTCTTGGTGTCATCCTCGAGCTCCAAACCTTGATATTCTAACTTGCGTCAAAGATTCTCACATATGgtatgtagttttctttctcctttggtggcttaaagtttcgtatattttttatttgatagtgtgaccatgcactatattcattatatatataaagaattttaattttaatttttgttag--

upper sequence: LOC_Os01g46510.2 (Oryza sativa), 5'ss of exon 9
lower sequence: AT5G24710.1 (Arabidopsis thaliana), 5'ss of exon 9
AACCAGTACCTAAACTTGCTTGCCATAGTGTTGCATCGTGGTGTCATCCTCGTGCACCAAACCTTGATATTCTGACTTGTGTCAAGGACTCCCATATATGgtatgttcctgactttggaaggaaatatcaagctatagatattttatagtgctttcaagtttcaataatgacttacctctctgatccctcttttgttttgtgttacag
|||| || || ||||| |||||||| ||||||||||| |||||||| ||||| || ||||||||||||||| ||||||| || || || || || ||||||||| ||  |   ||        || ||   |   |  ||||  || | |   || | || |     |||| |   ||   || |     |||||             
AACCTGTCCCGAAACTAGCTTGCCACAGTGTTGCATCTTGGTGTCACCCTCGAGCGCCAAACCTTGATATTTTGACTTGCGTTAAAGATTCACACATATGgtatctttgt---tt--------aagatttggtattgtatatggtagaatatatttatgtatattagatgagtggtctaattgtttgaatttttgcag----------

upper sequence: LOC_Os01g46510.2 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv08s0056g00040.t01 (Vitis vinifera), 5'ss of exon 10
AACCAGTACCTAAACTTGCTTGCCATAGTGTTGCATCGTGGTGTCATCCTCGTGCACCAAACCTTGATATTCTGACTTGTGTCAAGGACTCCCATATATGgtatgttcctgactttggaaggaaatatcaagctatagatattttatagtgctttcaagtttcaataatgacttacctctctgatccctcttttgttttgtgttacag
|||| || || || || |||||||||||||| || || ||||| || ||||| || ||||||||||||||  | ||||||||||| || ||||| || |||||||    |  || |    || ||| |   | || | || |    |||||  |     ||       ||| |       ||  |           ||    |     
AACCTGTTCCAAAGCTGGCTTGCCATAGTGTGGCGTCTTGGTGCCACCCTCGAGCTCCAAACCTTGATATCTTAACTTGTGTCAAAGATTCCCACATTTGgtatgcatttt-ctcttcctggcaatgtt--gttaaaaatttccattagtgtgtattctttattgctgtgattagggcaactcgtttaaacaggaattctcat-----

upper sequence: LOC_Os01g46510.2 (Oryza sativa), 5'ss of exon 9
lower sequence: EFJ13686 (Selaginella moellendorffii), 5'ss of exon 9
AACCAGTACCTAAACTTGCTTGCCATAGTGTTGCATCGTGGTGTCATCCTCGTGCACCAAACCTTGATATTCTGACTTGTGTCAAGGACTCCCATATATGgtatgttcctgactttggaaggaaatatcaagctatagatattttatagtgctttcaagtttcaataatgacttacctctctgatccctcttttgttttgtgttacag
| ||  | || ||| |||| || || |||||||| || ||||| ||||||||||| || ||| | || || ||||||||||| |||||||| ||||| ||||| ||      |||| |       |||    ||| | |  ||||   |    | ||                                                   
AGCCCATTCCAAAAGTTGCGTGTCAAAGTGTTGCCTCCTGGTGCCATCCTCGTGCCCCCAACGTGGACATCCTGACTTGTGTGAAGGACTCACATATTTGgtacgt-----gcttttggtatgtctattggtctacaaagttttt---gcttctgcag--------------------------------------------------

upper sequence: LOC_Os01g46510.2 (Oryza sativa), 5'ss of exon 9
lower sequence: EFJ28983 (Selaginella moellendorffii), 5'ss of exon 9
AACCAGTACCTAAACTTGCTTGCCATAGTGTTGCATCGTGGTGTCATCCTCGTGCACCAAACCTTGATATTCTGACTTGTGTCAAGGACTCCCATATATGgtatgttcctgactttggaaggaaatatcaagctatagatattttatagtgctttcaagtttcaataatgacttacctctctgatccctcttttgttttgtgttacag
| ||  | || ||| |||| || || |||||||| || ||||| ||||||||||| || ||| | || || ||||||||||| |||||||| ||||| ||||| ||      |||| |       |||    ||| | |  ||||   ||   | ||                                                   
AGCCCATTCCAAAAGTTGCGTGTCAAAGTGTTGCCTCCTGGTGCCATCCTCGTGCCCCCAACGTGGACATCCTGACTTGTGTGAAGGACTCACATATTTGgtacgt-----gcttttggtatgtctattggtctacaaagttttt---gtttctgcag--------------------------------------------------