1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGGACTGAACAAGCCACTCTTAAGTGCTCGTAACTTCCTGAAGAGCGAAAGCATCGGTGCTTCCCAGTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGATgtaagtgatttcatgcagcaaataatcgtaagcataattatgtacattgtcagttactaagtcaaaaggtttgattatgtaccactttttaaatcacaag...
species | Oryza sativa |
transcript | LOC_Os01g45620.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CATCGGTGCTTCCCACGTGTGTTGTCATAAAAGAAAAGCGAG-AAAAGAT GAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCCGCATEST: gi|86872368|gb|CI341992.1|CI341992
genomic: CATCGGTGCTTCCCA-GTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGATgtaagtgatt ... atgtatgcagGAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCCGCAT
EST: GCATCGGTGCTTCCCAGTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGAT GAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCCGCATEST: gi|88252974|gb|CI351600.1|CI351600
genomic: GCATCGGTGCTTCCCAGTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGATgtaagtgatt ... atgtatgcagGAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCCGCAT
EST: CATCGGTGCTTCCCACTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGAT GAAGAATCTATGTCAGAATATATGAATGAACCACCTGATGGGGTGCCGCATEST: gi|218492448|gb|FG950894.1|FG950894
genomic: CATCGGTGCTTCCCAGTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGATgtaagtgatt ... atgtatgcagGAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCCGCAT
EST: GCATCGGTGCTTCCCAGTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGAT GAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCCGCATEST: gi|88252725|gb|CI351153.1|CI351153
genomic: GCATCGGTGCTTCCCAGTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGATgtaagtgatt ... atgtatgcagGAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCCGCAT
EST: TGTCATAAAAGAAAAGCGAGAAAAAGAT GAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCCGCATEST: gi|27554205|gb|CA998105.1|CA998105
genomic: TGTCATAAAAGAAAAGCGAGAAAAAGATgtaagtgatt ... atgtatgcagGAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCCGCAT
EST: GCATCGGTGCTTCCCAGTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGAT GAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCCGCATEST: gi|27554152|gb|CA998052.1|CA998052
genomic: GCATCGGTGCTTCCCAGTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGATgtaagtgatt ... atgtatgcagGAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCCGCAT
EST: GCATCGGTGCTTCCCAGTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGAT GAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCAGCAT
genomic: GCATCGGTGCTTCCCAGTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGATgtaagtgatt ... atgtatgcagGAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCCGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGACTGAACAAGCCACTCTTAAGTGCTCGTAACTTCCTGAAGAGCGAAAGCATCGGTGCTTCCCAGTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGATgtaagtgatttcatgcagcaaataatcgtaagcataattatgtacattgtcagttactaagtcaaaaggtttgattatgtaccactttttaaatcacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA