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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAGTAGGACAAACCATCAGGCAAAACAAAAAGGGGACAGATCATTCCATGGCAAATCTTTGTGCGGACATACTGAACCTCATAAAATCATGTCAAATgtaagttaaaatcatgtcaaatgtaagttctcattgatttcctgtagtttttattgttgaacatgaacgatacatttttacaagatatttatgtcaggaaatgctaatcgaaactctgctataacctttcattggtactttcatactcatcgtctaccagtttctaaatgtag

Basic information

species Oryza sativa
transcript LOC_Os01g39810.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29628584|gb|CB633595.1|CB633595
EST:     ATGGCAAATCTTTGTGCGGACATACTGAACCTCATAAAATCGTGTCAAAT                         TGTCATCAAGCTTCCACTTTGTCCAGTGATGGAAGGGTCATACTGTCATGA
genomic: ATGGCAAATCTTTGTGCGGACATACTGAACCTCATAAAATCATGTCAAATgtaagttaaa ... ctaaatgtagTGTCATCAAGCTTCCACTTTGTCCAGTGATGGAAGGGTCATACTGTCATGA
EST: gi|29628609|gb|CB633620.1|CB633620
EST:     ATGGCAAATCTTTGTGCGGACATACTGAACCTCATAAAATCGTGTCAAAT                         TGTCATCAAGCTTCCACTTTGTCCAGTGATGGAAGGGTCATACTGTCATGA
genomic: ATGGCAAATCTTTGTGCGGACATACTGAACCTCATAAAATCATGTCAAATgtaagttaaa ... ctaaatgtagTGTCATCAAGCTTCCACTTTGTCCAGTGATGGAAGGGTCATACTGTCATGA