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TGAACCTCCTGCTGGTCAAATGAAGGAACTTTTTGGGATTGATCTCGTGAGCAGgttctctctctctctctctctctcacacacacacacacacacacacacacactcatctgttttaattgggggggtgtgttcttttctgttgtacaaaggt...
species | Oryza sativa |
transcript | LOC_Os01g36930.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CCTCCTGCTGGTCAAATGAAGGAACTTTTTGGGATTGATCTCGTGAGCAG GGTCCATTGTGCAGAAAGTGGTGAAGAGAGTTTAGAGAGAGAATCAGTTTAEST: gi|29679500|gb|CB675775.1|CB675775
genomic: CCTCCTGCTGGTCAAATGAAGGAACTTTTTGGGATTGATCTCGTGAGCAGgttctctctc ... ctatttgcagGGTCCATTGTGCAGAAAGTGGTGAAGAGAGTTTAGAGAGAGAATCAGTTTA
EST: CCTCCTGCTGGTCAAATGAAGGAACTTTTTGGGATTGATCTCGTGAGCAG GGTCCATTGTGCAGAAAGTGGTGAEST: gi|29615418|gb|CB620430.1|CB620430
genomic: CCTCCTGCTGGTCAAATGAAGGAACTTTTTGGGATTGATCTCGTGAGCAGgttctctctc ... ctatttgcagGGTCCATTGTGCAGAAAGTGGTGA
EST: CCTCCTGCTGGTCAAATGAAGGAACTTTTTGGGATTGATCTCGTGAGCAG GGTCCATTGTGCAGAAAGTGGTGAAGAGAGTTTAGAGAGAGAATCAGTTTAEST: gi|29674105|gb|CB670380.1|CB670380
genomic: CCTCCTGCTGGTCAAATGAAGGAACTTTTTGGGATTGATCTCGTGAGCAGgttctctctc ... ctatttgcagGGTCCATTGTGCAGAAAGTGGTGAAGAGAGTTTAGAGAGAGAATCAGTTTA
EST: CCTCCTGCTGGTCAAATGAAGGAACTTTTTGGGATTGATCTCGTGAGCAG GGTCCATTGTGCAGAAAGTGGTGAAGAGAGTTTAGAGAGAGAAATCAGTT-EST: gi|58601182|gb|CK011710.1|CK011710
genomic: CCTCCTGCTGGTCAAATGAAGGAACTTTTTGGGATTGATCTCGTGAGCAGgttctctctc ... ctatttgcagGGTCCATTGTGCAGAAAGTGGTGAAGAGAGTTTAGAGAGAGAA-TCAGTTT
EST: CCTCCTGCTGGTCAAATGAAGGAACTTTTTGGGATTGATCTCGTGAGCAG GGTCCATTGTGCAGAAAGTGGTGAAGAGAGTTTAGAGAGAGAATCAGTTTAEST: gi|218489926|gb|FG960730.1|FG960730
genomic: CCTCCTGCTGGTCAAATGAAGGAACTTTTTGGGATTGATCTCGTGAGCAGgttctctctc ... ctatttgcagGGTCCATTGTGCAGAAAGTGGTGAAGAGAGTTTAGAGAGAGAATCAGTTTA
EST: CCTCCTGCTGGTCAAATGAAGGAACTTTTTGGGATTGATCTCGTGAGCAG GGTCCATTGTGCAGAAAGTGGTGAAGAGAGTTTAGAGAGAGAATCAGTTTAEST: gi|29615343|gb|CB620355.1|CB620355
genomic: CCTCCTGCTGGTCAAATGAAGGAACTTTTTGGGATTGATCTCGTGAGCAGgttctctctc ... ctatttgcagGGTCCATTGTGCAGAAAGTGGTGAAGAGAGTTTAGAGAGAGAATCAGTTTA
EST: CCTCCTGCTGGTCAAATGAAGGAACTTTTTGGGATTGATCTCGTGAGCAG GGTCCATTGTGCAGAAAGTGGTGAAGAGAGTTTAGAGAGAGAATCAGTTTAEST: gi|66916241|gb|CX103089.1|CX103089
genomic: CCTCCTGCTGGTCAAATGAAGGAACTTTTTGGGATTGATCTCGTGAGCAGgttctctctc ... ctatttgcagGGTCCATTGTGCAGAAAGTGGTGAAGAGAGTTTAGAGAGAGAATCAGTTTA
EST: CCTCCTGCTGGTCAAATGAAGGAACTTTTTGGGATTGATCTCGTGAGCAG GGTCCATTGTGCAGAAAGTGGTGAAGAGAGTTTAGAGAGAGAATCAGTTTA
genomic: CCTCCTGCTGGTCAAATGAAGGAACTTTTTGGGATTGATCTCGTGAGCAGgttctctctc ... ctatttgcagGGTCCATTGTGCAGAAAGTGGTGAAGAGAGTTTAGAGAGAGAATCAGTTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAACCTCCTGCTGGTCAAATGAAGGAACTTTTTGGGATTGATCTCGTGAGCAGgttctctctctctctctctctctcacacacacacacacacacacacacacactcatctgttttaattgggggggtgtgttcttttctgttgtacaaaggt
- - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggggg