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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGACATTATTGCGGAAAGGCTGGGCTTCATGCTGGTTTTTGGTGATCTAGTGTTCATTCCGTTTACCTTCACCATTCAGgtgtgcatccatacatttttagttctgcaattgctaagtttgacccatgtcgctgttttagtcggattaccattcatggatcagaattatgttcatatat...

Basic information

species Oryza sativa
transcript LOC_Os01g25189.4
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g25189.6 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G473533_T06 (Zea mays), 5'ss of exon 9
ATGGGACATTATTGCGGAAAGGCTGGGCTTCATGCTGGTTTTTGGTGATCTAGTGTTCATTCCGTTTACCTTCACCATTCAGgtgt---gcatccatacatttttagttctgcaattgctaagtttgacccatgtcgctgttttagtcggattaccattcatggatcagaattatgttcatatat
 |||||||||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||| || || |||||||| |||||||| |    ||| | | ||  | | |  |     | ||||  | |     |  |   | ||| ||    |  |      |          ||| |  ||  |||
GTGGGACATTATTGCTGAAAGACTGGGTTTCATGCTGGTGTTTGGTGATCTAGTTTTCATCCCTTTCACCTTCACTATTCAGgtatcctacattcctgcaaatgttgacccatggt-gctagctattgaataccttatt-tttgagaaaaaacatagaataccttattaccttaggcacac-tat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58679610|gb|CK068297.1|CK068297
EST:     TGCTGGTTTTTGGTGATCTAGTGTTCATTCCGTTTACCTTCACCATTCAG                         GGATGGTGGCTTTTGAGAAACAATGTGGAGCTGTCCCTTTTGGCTGCTACA
genomic: TGCTGGTTTTTGGTGATCTAGTGTTCATTCCGTTTACCTTCACCATTCAGgtgtgcatcc ... tgatgaccagGGATGGTGGCTTTTGAGAAACAATGTGGAGCTGTCCCTTTTGGCTGCTACA
EST: gi|87015902|gb|CI279654.1|CI279654
EST:     TGCTGGTTTTTGGTGATCTAGTGTTCATTCCGTTTACCTTCACCATTCAG                         GGATGGTGGCTTTTGAGAAACAATGTGGAGCTGTCCCTTTTGGCTGCTACA
genomic: TGCTGGTTTTTGGTGATCTAGTGTTCATTCCGTTTACCTTCACCATTCAGgtgtgcatcc ... tgatgaccagGGATGGTGGCTTTTGAGAAACAATGTGGAGCTGTCCCTTTTGGCTGCTACA