1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTTCCCTTGCATCTGATTTTATGTACAATCATATGGCGAAGGATGTAACAGCAAGTTTCGGCTATGATTATATGTTGAGACAGgtatatcttgattgtttccaccttttcggttttttttttgtgcgttggtctagcatggtatgtgggatgtaaaagttgctgcaacaacttgagcatattt...
species | Oryza sativa |
transcript | LOC_Os01g16910.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGGCGAAGGATGT-ACAGCAAGTTTTGGCTATGATTATATGTTGAGACAG TGTCGTCTGAGGGGGAAGATTGATACCAATGGCGTTGTTTCTTGCTCTTTTEST: gi|27334429|gb|CA882880.1|CA882880
genomic: TGGCGAAGGATGTAACAGCAAGTTTCGGCTATGATTATATGTTGAGACAGgtatatcttg ... aaccttgcagTGTCGTCTGAGGGGGAAGATTGATACCAATGGCGTTGTTTC-TGCTCTTTT
EST: TGGCGAAGGATGTAACAGCAAGTTTCGGCTATGATTATATGTTGAGACAG TGTCGTCTGAGGGGGAAGATTGATACCAATGGCGTTGTTTCTGCTCTTTTGEST: gi|86498607|gb|CI141240.1|CI141240
genomic: TGGCGAAGGATGTAACAGCAAGTTTCGGCTATGATTATATGTTGAGACAGgtatatcttg ... aaccttgcagTGTCGTCTGAGGGGGAAGATTGATACCAATGGCGTTGTTTCTGCTCTTTTG
EST: TGGCGAAGGATGTAACAGCAAGTTTCGGCTATGATTATATGTTGAGACAG TGTCGTCTGAGGGGGAAGATTGATACCAATGGCGTTGTTTCTGCTCTTTTGEST: gi|88223980|gb|CI223829.1|CI223829
genomic: TGGCGAAGGATGTAACAGCAAGTTTCGGCTATGATTATATGTTGAGACAGgtatatcttg ... aaccttgcagTGTCGTCTGAGGGGGAAGATTGATACCAATGGCGTTGTTTCTGCTCTTTTG
EST: TGGCGAAGGATGTAACAGCAAGTTTCGGCTATGATTATATGTTGAGACAG TGTCGTCTGAGGGGGAAGATTGATACCAATGGCGTTGTTTCTGCTCTTTTGEST: gi|88225719|gb|CI225635.1|CI225635
genomic: TGGCGAAGGATGTAACAGCAAGTTTCGGCTATGATTATATGTTGAGACAGgtatatcttg ... aaccttgcagTGTCGTCTGAGGGGGAAGATTGATACCAATGGCGTTGTTTCTGCTCTTTTG
EST: TGGCGAAGGATGTAACAGCAAGTTTCGGCTATGATTATATGTTGAGACAG TGTCGTCTGAGGGGGAAGATTGATACCAATGGCGTTGTTTCTGCTCTTTTGEST: gi|27410223|gb|CA923293.1|CA923293
genomic: TGGCGAAGGATGTAACAGCAAGTTTCGGCTATGATTATATGTTGAGACAGgtatatcttg ... aaccttgcagTGTCGTCTGAGGGGGAAGATTGATACCAATGGCGTTGTTTCTGCTCTTTTG
EST: TGGCGAAGGATGTAACAGCAAGTTTCGGCTATGATTATATGTTGAGACAG TGTCGTCTGAGGGGGAAGATTGATACCAATGGCGTTGTTTCTGCTCTTTTG
genomic: TGGCGAAGGATGTAACAGCAAGTTTCGGCTATGATTATATGTTGAGACAGgtatatcttg ... aaccttgcagTGTCGTCTGAGGGGGAAGATTGATACCAATGGCGTTGTTTCTGCTCTTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTCCCTTGCATCTGATTTTATGTACAATCATATGGCGAAGGATGTAACAGCAAGTTTCGGCTATGATTATATGTTGAGACAGgtatatcttgattgtttccaccttttcggttttttttttgtgcgttggtctagcatggtatgtgggatgtaaaagttgctgcaacaacttgagcatattt
- - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG