1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATCTGTCAGCAATGGCAGTGGAAGTGGAATTGGAAGCTTCCTTGGTTGGGCTATGGCGGTAATCTATATGGGTGGACGACTTCCCCAGATCTGGTTAAATgtaatacttcacaaatagcccaacgtttttttctttcttactatattgagattaggagaaatgtgttcatggcaattttgtgtggcaactggtaaaaagt...
species | Oryza sativa |
transcript | LOC_Os01g16170.3 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTATGGCGGTAATCTATATAGGTGGACGACTTCCCCAGATCTGGTTAAAT ATGAAAAGAGGGAATGCTGAGGCAAGTTCATCGCCATTTTTACTGAGGAGAEST: gi|38469843|gb|CF953974.1|CF953974
genomic: CTATGGCGGTAATCTATATGGGTGGACGACTTCCCCAGATCTGGTTAAATgtaatacttc ... tactttgcagATGAAAAGAGGGAATGCTGAGGCAAGTTCATCGCCATTTTTACTGAGGAGA
EST: CTATGGCGGTAATCTATATNGGTGGACGACTTCCCCAGATCTGGTTAAAT ATGAAAAGAGGGAATGCTGAGGCAAGTTCATCGCCATTTTTACTGAGGAGAEST: gi|33684544|gb|CF312783.1|CF312783
genomic: CTATGGCGGTAATCTATATGGGTGGACGACTTCCCCAGATCTGGTTAAATgtaatacttc ... tactttgcagATGAAAAGAGGGAATGCTGAGGCAAGTTCATCGCCATTTTTACTGAGGAGA
EST: CTATGGCGGTAATCTATATGGGTGGACGACTTCCCCAGATCTGGTTAAAT ATGAAAAGAGGGAATGCTGAGGCAAGTTCATCGCCATTTTTACTGAGGAGA
genomic: CTATGGCGGTAATCTATATGGGTGGACGACTTCCCCAGATCTGGTTAAATgtaatacttc ... tactttgcagATGAAAAGAGGGAATGCTGAGGCAAGTTCATCGCCATTTTTACTGAGGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGTCAGCAATGGCAGTGGAAGTGGAATTGGAAGCTTCCTTGGTTGGGCTATGGCGGTAATCTATATGGGTGGACGACTTCCCCAGATCTGGTTAAATgtaatacttcacaaatagcccaacgtttttttctttcttactatattgagattaggagaaatgtgttcatggcaattttgtgtggcaactggtaaaaagt
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