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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttactcaccttgcaccagttctattcagctttatgaaatgcaaatataaccgctttcatagtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatag

Basic information

species Oryza sativa
transcript LOC_Os01g14950.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G088231_T01 (Zea mays), 5'ss of exon 9
CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttactcaccttgcaccagttctattcagctttatgaaatgcaaatataaccgctttcatagtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatag
|| || || | ||||| ||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||| || || |||   ||||| ||||||||||||  |  ||   |||||  || | |  ||  ||||    |  ||     |   |  |||   ||  |     || | |   |||| ||  | || || | |  |   |        
CTTTGTTGCAACTGCTTCAAACAGCAGAGTTTGATATCAAGAAGGAGGCTGCTTGGGCCATCTCAAATGCTACCTCTGGTGGTTCTCATGAGCAAATCAAgtatactaccttgacttgctgcactgccttttggcttgtgcagttgtgtgcaatgcaacttatgtatgtcacctttgaacggaatttagaactcatgttttgtcttgcatag------

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 8
CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttactcaccttgcaccagttctattcagctttatgaaatgcaaatataaccgctttcata-gtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatag
|| || || | ||||| |||   |||||||| |||||||||||||| ||||| |||||||||||||| ||||| || || |||  |||||| ||||||||||||  |  ||   ||| |  || | || ||   |||    |  ||     |   |  |||   || || | |  |  | | | |||| ||  | || |||  |  |    ||      
CTTTGTTGCAACTGCTTCAAGGAGCAGAGTTTGATATCAAGAAGGAGGCTGCTTGGGCCATCTCAAACGCTACCTCTGGTGGTTCCCATGAGCAAATCAAgtatactatcttgacttactgcactgctttttgccttgtgcagttgtgtgcaatgcaacttatgtatgtctgagttcgaacataatttagaactcatgttgcgtcttgcaatag-----

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA19G41770.1 (Glycine max), 5'ss of exon 9
CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttactcaccttgcaccagttctattcagctttatgaaatgcaaatataaccgctttcatagtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatag
|| | ||  || |||| ||||  || ||||| ||||||||||| || ||||| ||||| ||||||||||||||||| || ||    ||||| |||||||||||||   |    |||||  |      | ||   | ||         | || | |  |   | |||||||  ||||    || |   || |||||   | | |  || ||| | |   
CTTTAGTCCATTTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCAATCTCAAATGCTACTTCGGGTGGATCTCATGAACAAATCAAgtatggagagat-ccttgtgcttagaatgttt--ccttg--------agattttattggggttatagttt-gtgttc--tttgaagaggttttgaatctttttccttggttgacag--

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA20G38320.3 (Glycine max), 5'ss of exon 9
CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttactcaccttgcaccagttctattcagctttatgaaatgcaaatataaccgctttcatagtttcatgttaa--gcttcatttggatttgatattgtatggtttgttaaaatag-----------------------------------------------------
|| |||| |||||||| ||||  || ||||| ||||||||||| |||||||| ||||| |||||||||||||| || || |||   ||||| |||||||||||||   |  ||| |      | |  | |  |      | | |||     ||||    |||| | |    || | ||    |||     | ||||    |   | ||  |  ||    |                                                     
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaagcacttgtttttaatattctcaaagaggttaatatgatctcataatttttttccttgcaagatatgaattatttccccctggtttgcaggttcctagtaagccaagggtgtattaagcccttgtgtgatcttctcatctgtcctgatcctagaattgttacag

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA09G04430.1 (Glycine max), 5'ss of exon 9
CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttactcaccttgcaccagttctattcagctttatgaaatgcaaatataaccgctttcatagtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatag
| || || ||||| || ||||  || ||||| || || || || |||||||| ||||| |||||||||||||| || || |||| |||||| || ||||||||||  |           || | |  || |  |||||||||   |||||| | |    | |   |  || ||||   |  |  |    || ||  |||||| |              
CCCTTGTCAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAAGAAGCTGCTTGGGCAATCTCAAATGCTACATCTGGTGGTACCCATGAGCAGATCAAgtatgaat----------tactattattactttgctttatgatg-gcaaat-tgataattattgaaaatttatgtattgacttgtc---atatgtgattgtaag--------------

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA03G39210.1 (Glycine max), 5'ss of exon 10
CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttactcaccttgcaccagttctattcagctttatgaaatgcaaatataaccgctttcatagtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatag
|| | ||  || |||| ||||  || ||||| ||||||||||| || ||||| ||||| |||||||||||||||||||| ||    ||||| |||||||||||||   |     ||||  |      | ||   | ||         | || | |  |   | |||||||  | |     || |   || |||||   | | |  || ||| | |   
CTTTAGTCCATTTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCAATCTCAAATGCTACTTCAGGTGGATCTCATGAACAAATCAAgtatggagagat-tcttgtgcttagaatgttt--ccttg--------agattttattggggttatagttttttttc---tttgaagaggttttgagtctttttccttggttgacag--

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA15G15480.1 (Glycine max), 5'ss of exon 9
CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgt----ttactcaccttgcaccagttct-attcagctttatgaaatgcaaatataaccgctttcatagtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatag
| || || ||||| || ||||  || || || || || || || |||||||| ||||| |||||||||||||| || ||||||| |||||| || ||||||||||     ||| |    |      | || | | |  |||||||||  ||   |  |      | |   |  || ||||   |  | ||    |||||   ||||| |              
CCCTTGTCAATCTTCTTCAAAATGCTGAATTTGACATAAAAAAAGAAGCTGCTTGGGCAATCTCAAATGCTACATCTGGCGGTACCCATGAGCAGATCAAgtatgaattattattattatcatcttattttttactttgctttatga--tgatgaattggtaattattggaaatttatgtattgacttatc-atatttgg--ttgtaag--------------

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA17G03430.1 (Glycine max), 5'ss of exon 9
CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttactcaccttgcaccagttctattcagctttatgaaatgcaaatataaccgctttcatagtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatag
| || || ||||| || ||||  || || || || || || ||||||||||| ||||| |||||||||||||| || || || |  ||||| || |||||||||||| | |  |  || |   |||       | | | |  |||||| |         ||| ||   ||  || ||   |||| |   || | ||  ||| |               
CCCTTGTCAATCTTCTTCAAAATGCGGAATTTGACATTAAAAAGGAAGCTGCTTGGGCAATCTCAAATGCTACATCTGGTGGAATTCATGAGCAGATCAAgtatgtt-atttcctctg-attggtt-------gttctttataatgcacac-------tttttatgaatttgtggta---ttcactc--atcttatgctgtttcaag-----------

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA10G29000.1 (Glycine max), 5'ss of exon 9
CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttactcaccttgcaccagttctattcagctttatgaaatgcaaatataaccgctttcatagtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatag
|| |||| |||||||| ||||  || ||||| ||||||||||| |||||||| ||||| |||||||||||||| || || |||   ||||| |||||||||||||            ||||  ||| | |  |     | | |  |  ||||| | |    ||||| |||  | |          |   | ||  |  |   |||| ||         
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatgggggg-----aagcacttgttttttatattcccaagtag-gttaatatgatc----tcataattttttttccttgcaagatataaattatttctccctggtctgcag------

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA20G38320.1 (Glycine max), 5'ss of exon 9
CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttactcaccttgcaccagttctattcagctttatgaaatgcaaatataaccgctttcatagtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatag
|| |||| |||||||| ||||  || ||||| ||||||||||| |||||||| ||||| |||||||||||||| || || |||   ||||| |||||||||||||   |  ||| |        || || |    | |   | | |  ||||| | |    ||||| |||  |     ||   || || |||   |      |||||||         
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaagcactt------gtttttaat--attctcaaagaggttaatatgatc----tcataatttttttccttgcaagatatgaatt-atttccccctggtttgcag------

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
lower sequence: AT4G16143.2 (Arabidopsis thaliana), 5'ss of exon 8
CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttactcaccttgcaccagttctattcagctttatgaaatgcaaatataaccgctttcatagtttcatgttaagc--ttcatttggatttgatattgtatggtttgttaaaatag
|||| || |||||||| ||||  || ||||| ||||| ||||| |||||||| ||||| || |||||||| |||||||| |||   | ||| ||||||||||| | |||  |    |  ||      | ||| | |      ||  |   || || |  |||  | |||   | | || |  |  |||  | | |    |||| || |||          
CTCTTGTCAATCTGCTTCAAAATGCGGAGTTTGATATAAAGAAAGAAGCTGCGTGGGCAATATCAAATGCCACTTCAGGTGGTTCTCCTGACCAAATCAAgtaagattatccgatataaact--ccatgttctgttgatctcaactcctttagaatc--tttgttggttatttttcaaacagtcaattaagttattccgttgtgtgttttag--------

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
lower sequence: AT3G06720.2 (Arabidopsis thaliana), 5'ss of exon 9
CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtt--tactcaccttgcaccagttctatt--cagctttatgaaatgcaaatataaccgctttcatagtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatag
|  |||||| |||||| ||||  || || || || || |||||||||||||||||||| || |||||||| |||||||| |||   ||||||||||| ||||||||   |       ||||     |   | |  ||| ||  |       | |||||     ||   ||  |  || || |  |||  ||    |||   || ||  |             
CGTTGGTGAGTCTGCTTCAAAATGCTGAATTTGACATTAAGAAGGAAGCTGCATGGGCAATTTCAAATGCAACTTCAGGTGGTTCTCATGATCAAATAAAgtatgtcactgtcttttttgcgttcctctaacttccagtttcttctctcatatatatact---ttgtgtatatatatattgatgttctgttcccgttgg--ttatacag-------------

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv05s0077g01430.t01 (Vitis vinifera), 5'ss of exon 9
CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttactca--ccttgcaccagttctattcagcttta--tgaaatgcaaatataaccgctttcatagtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatag
|  ||||  || |||| ||||| || ||||| ||||| ||||| || || |||||||| || || ||||||||||| || || |  ||||| |||||||||||||||  ||     | ||      | ||  | |  |||     |||  |   | |||| |   |  || |||    || | |  | ||||    |||||| |                  
CCTTGGTTCATTTGCTTCAAACTGCCGAGTTTGATATAAAGAAAGAGGCAGCATGGGCAATATCGAATGCTACTTCTGGTGGCACTCATGAACAAATCAAgtatgttatcttgattcctgtgaagttccttcttatgtttggccaaaaccctcttttaacagacatagta-ttttggattgaccacc-tttgttggtgatatag------------------

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 9
CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttactcaccttgcaccagttctattcagctttatgaaatgcaaatataaccgctttcatagtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatag
| || ||  ||||||| ||||  || ||||| ||||||||||| || ||||| ||||| |||||||||||||| || || |||   ||||| ||||||||||||| |  ||        |    || |  |||  | |  | | |     | |    | ||    |      | ||    |   ||||    ||| |                     
CCCTTGTTCATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCAATCTCAAATGCTACATCTGGTGGTTCACATGAACAAATCAAgtatgat--cttgatagaaatttcttgttctcatgtcttagcagtcttgttctg--tgtttctgcatgcatgttttttattctctttgctgatgacag--------------------

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv07s0005g01100.t01 (Vitis vinifera), 5'ss of exon 9
CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttactcaccttgcaccagttctattcagctttatgaaatgcaaatataaccgctttcatagtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatag
| ||  |  ||||||| ||||  || || || || |||||||| || ||||| |||||||| |||||||||||||| || || | |||||||||||| |||||| | || |    || ||  |  |||| ||   ||  |||          | ||| |||    | ||| | |||    |     |  || | ||   |                  
CCCTTATCTATCTGCTTCAAAATGCTGAATTTGAGATCAAGAAAGAGGCTGCTTGGGCCATTTCAAATGCTACTTCTGGTGGAACCCATGATCAAATAAAgtatatatatt----tttca--atgtctaatctttttagtgatgctttttctttacctctta---aatttaaggtttgattcttcatccatgtcatgcag------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29680122|gb|CB676397.1|CB676397
EST:     AGCCATGATCAAATCAA                         GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
genomic: AGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: gi|29643711|gb|CB648718.1|CB648718
EST:     GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA                         GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: gi|33678045|gb|CF306284.1|CF306284
EST:     GCATGGGCCATGTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA                         GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: gi|29657150|gb|CB653425.1|CB653425
EST:     GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA                         GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: gi|58673193|gb|CK061879.1|CK061879
EST:     GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA                         GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTAT
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTAT
EST: gi|29677720|gb|CB673995.1|CB673995
EST:     AGCCATGATCAAATCAA                         GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
genomic: AGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: gi|29622104|gb|CB627115.1|CB627115
EST:     GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA                         GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: gi|29676486|gb|CB672761.1|CB672761
EST:     GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA                         GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: gi|218494873|gb|FG960745.1|FG960745
EST:     GCGTGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA                         GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: gi|29681892|gb|CB678167.1|CB678167
EST:     GGCGGTAGCCATGATCAAATCAA                         GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
genomic: GGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: gi|66912883|gb|CX099731.1|CX099731
EST:     GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA                         GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: gi|218480625|gb|FG956873.1|FG956873
EST:     GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA                         GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: gi|218501071|gb|FG960845.1|FG960845
EST:     GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA                         GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: gi|218505438|gb|FG959801.1|FG959801
EST:     GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA                         GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: gi|218479493|gb|FG944059.1|FG944059
EST:     GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA                         GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: gi|58684581|gb|CK073268.1|CK073268
EST:     GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA                         GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: gi|13806131|gb|AU181373.1|AU181373
EST:     GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA                         GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: gi|218496280|gb|FG960701.1|FG960701
EST:     GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA                         GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 73 (downstream exon)
Score: 56

CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTGCCCAGATATAAGAATCGTTACAGTTTGTTTGGAGGGTCTCGAGAACATT




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