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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGgttagtgccaattctggtgtttagttggccttgcgagttgttcggaggtgcagaagtttgtaacattaaaactgatcacacatcgcag

Basic information

species Oryza sativa
transcript LOC_Os01g14860.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g14860.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G024151_T01 (Zea mays), 5'ss of exon 8
CCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGgttagtgccaattctggtgtttagttggccttgcgagttgttcggaggtgcagaagtttgtaacattaaaactgatcacacatcgcag
||| ||||||| |||||||||||||| ||||||||||| |||||||||||||| | || |  ||||      | ||         |  || |   || |   | ||  |  | ||    ||| ||||     || ||||
CCTTTGTTTCCGGGTGAAAGTGGTGTGGACCAACTTGTTGAAATCATCAAGgtaattgtcggttctacaagcttgtgaatt----gtcttctatagaagcataaaatctgatcacccctaaaatgattttgtatggcag

upper sequence: LOC_Os01g14860.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM5G835235_T04 (Zea mays), 5'ss of exon 8
CCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGgttagtgccaattctggtgtttagttggccttgcgagttgttcggaggtgcagaagtttgtaacattaaaactgatcacacatcgcag
||| ||||||| |||||||||||||| |||||||| || ||||||||||||    ||  ||||| |     || ||   |  |     || | |  ||    | |  ||  | ||| |  |  ||||    ||||||||
CCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33381492|gb|CF196835.1|CF196835
EST:     CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG                         GTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
genomic: CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGgttagtgcca ... cacatcgcagGTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
EST: gi|58686155|gb|CK074842.1|CK074842
EST:     CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG                         GTCCTNTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTA
genomic: CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGgttagtgcca ... cacatcgcagGTCCT-TGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTA
EST: gi|58606572|gb|CK034605.1|CK034605
EST:     CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG                         GTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
genomic: CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGgttagtgcca ... cacatcgcagGTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
EST: gi|58687307|gb|CK075994.1|CK075994
EST:     CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG                         GTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
genomic: CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGgttagtgcca ... cacatcgcagGTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
EST: gi|58679602|gb|CK068289.1|CK068289
EST:     CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG                         GTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
genomic: CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGgttagtgcca ... cacatcgcagGTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
EST: gi|58590369|gb|CF988677.1|CF988677
EST:     CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG                         GTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
genomic: CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGgttagtgcca ... cacatcgcagGTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
EST: gi|218498670|gb|FG952679.1|FG952679
EST:     CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG                         GTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
genomic: CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGgttagtgcca ... cacatcgcagGTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
EST: gi|58602991|gb|CK013519.1|CK013519
EST:     CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG                         GTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
genomic: CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGgttagtgcca ... cacatcgcagGTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
EST: gi|58672614|gb|CK061300.1|CK061300
EST:     CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG                         GTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
genomic: CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGgttagtgcca ... cacatcgcagGTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
EST: gi|38469291|gb|CF953422.1|CF953422
EST:     CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG                         GTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
genomic: CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGgttagtgcca ... cacatcgcagGTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
EST: gi|29677190|gb|CB673465.1|CB673465
EST:     CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG                         GTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
genomic: CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGgttagtgcca ... cacatcgcagGTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
EST: gi|58679239|gb|CK067926.1|CK067926
EST:     CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG                         GTCCTTGGAACACCTACAAGGGAGGAAATTA
genomic: CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGgttagtgcca ... cacatcgcagGTCCTTGGAACACCTACAAGGGAGGAAATTA
EST: gi|29677191|gb|CB673466.1|CB673466
EST:     CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG                         GTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
genomic: CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGgttagtgcca ... cacatcgcagGTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
EST: gi|58682391|gb|CK071078.1|CK071078
EST:     CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG                         GTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
genomic: CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGgttagtgcca ... cacatcgcagGTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
EST: gi|66918477|gb|CX105325.1|CX105325
EST:     CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG                         GTCCTTGGAACACCTACAAGGGAGGAAATTGAAGATGCATGAATCCAAACT
genomic: CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGgttagtgcca ... cacatcgcagGTCCTTGGAACACCTACAAGGGAGGAAATT-AA-ATGCATGAATCCAAACT
EST: gi|2317500|gb|C22554.1|C22554
EST:     CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG                         GTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT
genomic: CTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGgttagtgcca ... cacatcgcagGTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTAT