1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCTATTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGgcaagtaggtgtttgagttgctactttttccccttcatgtcaactattaatgcagaaatttgatttaatatgtagccaattgcattgatgaaaattaaat...
species | Oryza sativa |
transcript | LOC_Os01g12670.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAG CTGCATTTTGGGACTATTGGTTAGGACTTCAGCTTTTCCCCTATGATGAGCEST: gi|88958571|gb|CI096087.1|CI096087
genomic: ATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGgcaagtaggt ... tttccagcagCTGCATTTTGGGACTATTGGTTAGGACTTCAGCTTTTCCCCTATGATGAGC
EST: ATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAG CTGCATTTTGGGACTATTGGTTAGGACTTCAGCTTTTCCCCTATGATGAGCEST: gi|29678140|gb|CB674415.1|CB674415
genomic: ATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGgcaagtaggt ... tttccagcagCTGCATTTTGGGACTATTGGTTAGGACTTCAGCTTTTCCCCTATGATGAGC
EST: ATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAG CTGCATTTTGGGACTATTGGTTAGGACTTCAGCTTTTCCCCTATGATGAGCEST: gi|33793232|gb|CF322496.1|CF322496
genomic: ATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGgcaagtaggt ... tttccagcagCTGCATTTTGGGACTATTGGTTAGGACTTCAGCTTTTCCCCTATGATGAGC
EST: ATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAG CTGCATTTTGGGACTATTGGTTAGGACTTCAGCTTTTCCCCTATGATGAGC
genomic: ATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGgcaagtaggt ... tttccagcagCTGCATTTTGGGACTATTGGTTAGGACTTCAGCTTTTCCCCTATGATGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTATTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGgcaagtaggtgtttgagttgctactttttccccttcatgtcaactattaatgcagaaatttgatttaatatgtagccaattgcattgatgaaaattaaat
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