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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgttttcttatattggatcaccttcctcataccattttacttgcagggcattgtaggccacttcaaaaccagtttctgcatcatgtttaatttgaaataaaaaaaatgtatctgcagctgcttaactgatccatctgttgttctttcgcttaccaccag

Basic information

species Oryza sativa
transcript LOC_Os01g10840.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G472625_T01 (Zea mays), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgtttt-----cttatattggatcaccttcctcataccattttacttgcagggcattgtaggc---cacttcaaaaccagtttctgcatcatgtttaatttgaaataaaaaaaatgtatctgcagctgcttaactgatccatctgttgttctttcgcttaccaccag
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||  ||||||||||| ||||||||||| ||||||||||||  | | | ||     | | | |  |  ||| |   | || |||||| ||  ||||   | |||||      ||||  |  |||   ||   |  |||||                                                                        
GTTCTTGGTACTCCAACCCGTGAGGAGATACGATGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCGTGGCACAAGgtattcttatgttaaaatcatgtttctgtccacatctatgattccatttcaccagcagc-tactgtagttatatacttgtagcccacggtccaaa--atgtta-----------------------------------------------------------------------

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgtttt----cttatattggatcaccttcctcataccattttacttgcagggcattgtaggc---cacttcaaaaccagtttctgcatcatgtttaatttgaaataaaaaaaatgtatctgcagctgcttaactgatccatctgttgttctttcgcttaccaccag-----------------------------
|||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||  ||||||||||| ||||||||||| ||||||||||||  ||| | ||    | | | |  | |||| |   | || ||||||||| ||||||  | |||||      ||||  |  |||   ||   |   | || ||   |   | || ||  ||| |    | |   |  |    |  | ||     |   ||  |||| | | |                             
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatatgttaaatcatgtttctgttcacatctattat-ccattttacctgcagg-tactgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA12G15470.2 (Glycine max), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgttttcttatattggatcaccttcctcataccattttacttgcagggcattgtaggccacttcaaaaccagtttctgcatcatgtttaatttgaaataaaaaaaatgtatctgcagctgcttaactgatccatctgttgttctttcgcttaccaccag
||||||||||||||||| || |||||||| || || |||||||| || ||||| ||||| | ||| ||||||||||| |||||||||||||||||||||   |  ||| || ||     |||  | |  | |||     | ||||||    ||||| |     ||| ||||   |  |    |  |||   || | |   | ||||  |                                                     
GTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacattt-ctcatcc---atcctccttttgatatt-catcacttgc----cattgga-----ctttaaaatggggattaaaaagatgaaaaaatagttgtcaaaatcaa----------------------------------------------------

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA06G42840.1 (Glycine max), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgttttcttatattggatcaccttcctcataccattttacttgcagggcattgtaggccacttcaaaaccagtttctgcatcatgtttaatttgaaataaaaaaaatgtatctgcagctgcttaactgatccatctgttgttctttcgcttaccaccag
|||||||||||||| || || |||||||| || ||||||||||| || ||||| || || | ||| ||||||||||| |||||||||||||||||||||      ||| || ||     ||  | ||    || | |   |       || | ||  |       | ||||    |      || || || ||  | ||                                                               
GTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTATACAGATTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatggcattt-ctcat-ccatattccttttgatattcaacgcttgcaattggactttaaaatatggattaaaaa-gatgaaaaaataattttcaaaatcaa---------------------------------------------------------------

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA13G36570.1 (Glycine max), 5'ss of exon 8
GTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgttttcttatattggatcaccttcctcataccattttacttgcagggcattgtaggccacttcaaaaccagtttctgcatcatgtttaatttgaaataaaaaaa-atgtatctgcagctgcttaactgatccatctgttgttctttcgcttaccaccag
 ||||||| ||||| ||||| || ||||| ||||||||||| || || ||||| || |||| ||| || || || || |||||||||||||| |||||| |   ||||  |   | |   ||   || ||  |     |||| |  |||  | |   ||  |  |||       |   | |     || |  |||||    ||  |   |||  || |                                             
ATTCTTGGCACTCCCACCCGAGAAGAAATTCGATGCATGAATCCTAATTATACAGATTTCAGATTCCCCCATATCAAAGCTCATCCTTGGCATAAGgtaactgcgtttcttgtcact---tctttttgcttttg----tttaataacagttcttccgagagcttttcttttgggggggcgg-gcactgatgcatttggtgcaacgatccatggttcag---------------------------------------------

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA12G33950.1 (Glycine max), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgttttcttatattggatcaccttcctcataccattttacttgcagggcattgtaggccacttcaaaaccagtttctgcatc-atgtttaatttgaaataaaaaaaatgtatctgcagctgcttaactgatccatctgttgttctttcgcttaccaccag
 ||||||| ||||| || || || ||||| ||||||||||| || || ||||| || |||| ||| || || || || |||||||||||||| |||||| |   |||   |         ||||  ||||  |  | |||   ||  |         | ||  || |  |  ||  |  |||| | ||   |  ||                                                                   
ATTCTTGGCACTCCTACTCGAGAAGAAATTCGATGCATGAATCCTAATTATACAGATTTCAGATTCCCCCATATCAAAGCTCATCCTTGGCATAAGgtaactgcgttcctt--------gtcac--tccttttggcttttgttttataaca------acgcttctactgatgcatctggtgcaacgatccatggttcag----------------------------------------------------------------

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 9
lower sequence: AT1G06390.1 (Arabidopsis thaliana), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagc-catgttttcttatatt---ggatcacc--ttcctcataccattttacttgcagggcattgtaggccacttcaaaaccagtttctgcatcatgtttaatttgaaataaaaaaaatgtatctgcagctgcttaactgatccatctgttgttctttcgcttaccaccag
||||||||||||||||| ||||| ||||| ||||| |||||||| ||||| || || || |  || || || || || ||||| ||||||||||||||||  ||| |   ||| | ||   || | | |  || || |   ||||       |||   |   |    |  ||||     ||  ||  |   ||  |  |      |     |                                                        
GTTCTTGGTACTCCAACTCGTGAAGAAATTCGATGTATGAACCCGAACTACACAGATTTTAGGTTCCCACAAATCAAAGCTCACCCTTGGCACAAGgtagttcatctcaccttttgttcctggttaagcaattactgaactcattacctacacagtatacattgaagcgattcatttatagcatcaaccatatactgtacccttgacctccag-------------------------------------------------------

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 9
lower sequence: AT2G30980.1 (Arabidopsis thaliana), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgttttcttatattggatcaccttcctcataccattttacttgcagggcattgtaggccacttcaaaaccagtttctgcatcatgtttaatttgaaataaaaaaaatgtatctgcagctgcttaactgatccatctgttgttctttcgcttaccaccag
||||||||||||||||| || || ||||| || ||||||||||| ||||| || || |||| ||| || || || || || || |||||||| ||||||   || | |   |  ||    |||| || |  |   | || || |   |        ||   | || |  || ||   |     |||||   ||   |||   || |   || | |  | |||   | ||   ||||                          
GTTCTTGGTACTCCAACTCGCGAAGAAATCCGGTGCATGAACCCAAACTACACAGACTTCAGATTCCCACAAATCAAAGCCCACCCTTGGCATAAGgtaat-atatatatatgcat---gtcac-tttcgaacttctttctaatcatacaattgcttacttctctacctaaacaacat-----tcatggaaaa---gaagctaacacggtgca-caactgctctatgacc--tccag-------------------------

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv12s0028g01810.t01 (Vitis vinifera), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgta-gccatgttttcttatattggatcacctt----cctcataccattttacttgcagggcattgtaggccacttcaaaaccagtttctgcatcatgtttaatttgaaataaaaaaaatgtatctgcagctgcttaactgatccatctgttgttctttcgcttaccaccag
|||||||||||||||||  | || ||||| ||||| |||||||| || |||||||| ||||  ||||||||||| || ||||||||||||||||||||| ||||| |  |  | | ||  || |  |       || ||    ||||     | || |  | | |        | | | | || |   | ||| |                                                                        
GTTCTTGGTACTCCAACTAGAGAAGAAATTCGATGTATGAACCCGAATTATACTGATTTCAGGTTTCCTCAGATCAAAGCTCATCCTTGGCACAAGgtatgccatttcctggtttcttcaatgatgtggtagtttcttaaatatttagcaataaggtag-ggaagatgtaatgagaacggattttatttaatgctct----------------------------------------------------------------------

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 9
lower sequence: PP1S74_168V6.1 (Physcomitrella patens), 5'ss of exon 8
GTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgttttcttatattggatcaccttcctcataccattttacttgcagggcattgtag--gccacttcaaaaccagtttctgcat-catgtttaatttgaaataaaaaaaatgtatctgcagctgcttaactgatccatctgttgttctttcgcttaccaccag
||  | || || || || || ||||| |||   |||||||| || ||||| || |||||||| |||||||| |||||||||||||||||||||||||||    || | | |      |  | |     ||  ||   |  |  | |    | | ||||   |    ||  ||| |  |  ||| || |||  | |   |||                                                                
GTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAGgtacggctggtctgt------gtgttagtggtctggtatggtgct-ttggagatgtactgtaacagttgattggaaagcgttacctgtattcataataacggtgatt--------------------------------------------------------------

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 9
lower sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgta-gccatgttttcttatattggatcaccttcctcat--accattttacttgcagggcattgtaggccacttcaaaaccagt--ttctgcatcatgtttaat---------------ttgaaataaaaaaaatgtatc----tgcagctgcttaactgatccatctgttgttctttcgcttaccaccag
||  | || || || || |||||||| |||   |||||||| || ||||| || |||||||| |||||||| ||||||||||| || |||||||||||| |   ||| |  ||   || | |    ||  |  |  |  || | | |||   || ||| |  |   | || | |   ||  || || ||   |||   |               |||  ||    | |||| | |    ||||    | | |   |        ||| |   |    |     |||
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 9
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 10
GTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgttttcttatattggatcaccttcctcataccattttacttgcagggcattgtaggccacttcaaaaccagtttctgcatcatgtttaatttgaaataaaaaaaatgtatctgcagctgcttaactgatccatctgttgttctttcgcttaccaccag
||  | |||||||| || || ||||||||   ||||||||| || ||||| || ||||| || || ||||||||||| || ||||| ||||||||||||     |   || |    |  ||| |  ||    |  |  || |  ||  |  | |||   |                                                                                                      
GTCTTAGGTACTCCTACTCGGGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaa--gagcaatcatccggtatatctctctctctgtctctcttga--tgtggctcgttgacag------------------------------------------------------------------------------------------------------

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 9
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 10
GTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgttttcttatattggatcaccttcctcataccattttacttgcagggcattgtaggccacttcaaaaccagtttctgcatcatgtttaatttgaaataaaaaaaatgtatctgcagctgcttaactgatccatctgttgttctttcgcttaccaccag
||  | |||||||| || || ||||||||   ||||||||| || ||||| || ||||| || || ||||||||||| || ||||| ||||||||||||     |   || |    |  ||| |  ||    |  |  || |  ||  |  | |||   |                                                                                                      
GTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaa--gagcaatcatccggtatatctctctctctgtctctcttga--tgtggctcgttgacag------------------------------------------------------------------------------------------------------

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 9
lower sequence: EFJ10962 (Selaginella moellendorffii), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgt--tttcttatattggatcaccttcctcataccattttacttgcagggcattgtaggccacttcaaaaccagtttctgcatcatgtttaatttgaaataaaaaaaatgtatctgcagctgcttaactgatccatctgttgttctttcgcttaccaccag
|||||||| || || || || ||||| ||    || ||||| |||||||| || || ||||| || ||||| || ||||| |||||||||||||||||    | |    |||||   | ||     | |   | ||  |   |    |                                                                                                                    
GTTCTTGGAACCCCTACTCGCGAGGAGATCAAGTGTATGAATCCCAACTACACGGAATTCAAGTTCCCTCAAATCAAGGCCCATCCTTGGCACAAGgtgcgtaggcaacttctttgttggggcggtcgtttacgtagtaacgtggcag--------------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218502288|gb|FG955716.1|FG955716
EST:     ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAG                         ATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
genomic: ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgt ... ttaccaccagATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
EST: gi|112786757|gb|EE591387.1|EE591387
EST:     ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAG                         ATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
genomic: ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgt ... ttaccaccagATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
EST: gi|218484555|gb|FG967869.1|FG967869
EST:     ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAG                         ATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTTCT
genomic: ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgt ... ttaccaccagATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGT-CT
EST: gi|58653217|gb|CK041897.1|CK041897
EST:     ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAG                         ATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
genomic: ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgt ... ttaccaccagATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
EST: gi|58604473|gb|CK015001.1|CK015001
EST:     ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAG                         ATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
genomic: ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgt ... ttaccaccagATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
EST: gi|29616356|gb|CB621368.1|CB621368
EST:     ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTGGGCACAAG                         ATTTTTCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
genomic: ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgt ... ttaccaccagATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
EST: gi|58604067|gb|CK014595.1|CK014595
EST:     ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAG                         ATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
genomic: ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgt ... ttaccaccagATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
EST: gi|218485319|gb|FG946192.1|FG946192
EST:     ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAG                         ATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
genomic: ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgt ... ttaccaccagATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
EST: gi|58601487|gb|CK012015.1|CK012015
EST:     ACTATACTGAGTGCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAG                         ATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
genomic: ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgt ... ttaccaccagATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
EST: gi|218482065|gb|FG957114.1|FG957114
EST:     ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAG                         ATTTTCCACAAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCT
genomic: ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgt ... ttaccaccagATTTTCCACAA-GAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCT
EST: gi|218498171|gb|FG949783.1|FG949783
EST:     ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAG                         ATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGA
genomic: ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgt ... ttaccaccagATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGA
EST: gi|58676242|gb|CK064929.1|CK064929
EST:     TCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAG                         ATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
genomic: TCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgt ... ttaccaccagATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
EST: gi|218485963|gb|FG956967.1|FG956967
EST:     CTCATCCTTGGCACAAG                         ATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
genomic: CTCATCCTTGGCACAAGgtagccatgt ... ttaccaccagATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
EST: gi|218490655|gb|FG954523.1|FG954523
EST:     ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAG                         ATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
genomic: ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgt ... ttaccaccagATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
EST: gi|58591644|gb|CF989952.1|CF989952
EST:     ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAG                         ATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT
genomic: ACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgt ... ttaccaccagATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 59 (upstream exon), 60 (downstream exon)
Score: 33

GTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgt ... ttaccaccagATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTTCTCCAATATTCACCAAGTCTACGCTGCACTGCT




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