1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GACAAAGTTGGCTCATGGAATGCTCTCTGGCAAATACTCTGTGCCAAATCAGGAGgtaagaatttgtttgtatatttgcctgttgttacgctttgtgttgttggtagttacctacttaccttagcaattttgtttgtttcagtaatggttcaatc...
species | Oryza sativa |
transcript | LOC_Os01g08200.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGTTGGCTCATGGAATGCTCTCTGGCAAATACTCTGTGCCAAATCAGGAG GGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAGEST: gi|58682680|gb|CK071367.1|CK071367
genomic: AGTTGGCTCATGGAATGCTCTCTGGCAAATACTCTGTGCCAAATCAGGAGgtaagaattt ... atattgatagGGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAG
EST: AG-TGGCTCATGGAATGCTCTCTGGCAAATACTCTGTGCCAAATCAGGAG GGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAGEST: gi|29622184|gb|CB627195.1|CB627195
genomic: AGTTGGCTCATGGAATGCTCTCTGGCAAATACTCTGTGCCAAATCAGGAGgtaagaattt ... atattgatagGGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAG
EST: AGTTGGCTCATGGAATGCTCTCTGGCAAATACTCTGTGCCAAATCAGGAG GGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAGEST: gi|33674839|gb|CF303078.1|CF303078
genomic: AGTTGGCTCATGGAATGCTCTCTGGCAAATACTCTGTGCCAAATCAGGAGgtaagaattt ... atattgatagGGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAG
EST: AGTTGGCTCATGGAATGCTCTCTGGCAAATACTCTGTGCCAAATCAGGAG GGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAGEST: gi|58661919|gb|CK050599.1|CK050599
genomic: AGTTGGCTCATGGAATGCTCTCTGGCAAATACTCTGTGCCAAATCAGGAGgtaagaattt ... atattgatagGGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAG
EST: AGTTGGCTCATGGAATGCTCTCTGGCAAATACTCTGTGCCAAATCAGGAG GGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAG
genomic: AGTTGGCTCATGGAATGCTCTCTGGCAAATACTCTGTGCCAAATCAGGAGgtaagaattt ... atattgatagGGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAAAGTTGGCTCATGGAATGCTCTCTGGCAAATACTCTGTGCCAAATCAGGAGgtaagaatttgtttgtatatttgcctgttgttacgctttgtgttgttggtagttacctacttaccttagcaattttgtttgtttcagtaatggttcaatc
- - - - - - CATGGA