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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGAGAGGGATTCTGTGTTGAGTGAATTTCGAAGTGGCAGATGCCCTATTCTTGTTGCTACTGATGTGGCTGCCCGAGGCTTGGACATAAAGGATATCAGgttgggacttctttgcaacttgtagagctgagatctcattgtaggccatagcataaagatgatgtccctgtgcatgttgtaacgactaatgacctgtaattcttcaaatggtattcactgacaattctctcatattcctgttacag

Basic information

species Oryza sativa
transcript LOC_Os01g07740.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g07740.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G066440_T01 (Zea mays), 5'ss of exon 8
CCGAGAGGGATTCTGTGTTGAGTGAATTTCGAAGTGGCAGATGCCCTATTCTTGTTGCTACTGATGTGGCTGCCCGAGGCTTGGACATAAAGGATATCAGgttggg--acttctttgcaacttgtagagct--gagatct---------cattgtag--gccatagcataaagatgatgtccctgtgcatgttgtaacgactaatgac----ctgtaattcttcaaatggtattcactgacaattctctcatattcctgttacag
| ||||||||||||||||||| ||| || ||||| ||||| || ||  | || || || ||||||||||| || |||||||||||||||||||| ||||||| |    |  ||||||   ||| || || |  |||  ||         ||||  ||   |  |  ||||   |||    | |||   ||    | | || |||  ||     |||||| | |  ||    |  |||||||||| ||   | | ||   | | ||
CTGAGAGGGATTCTGTGTTGAATGACTTCCGAAGCGGCAGGTGTCCAGTACTCGTAGCCACTGATGTGGCCGCTCGAGGCTTGGACATAAAGGACATCAGgtagtaccatatctttgttgcttctaaagttttgagggcttgacctaatcatttgagcaactgtgccatagtcatggcaacactgataataaaatgatgaataaacacatatttgtaatccatataaaataacccactgacaatccttctaaaatctcctcatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218485434|gb|FG946451.1|FG946451
EST:     CTTGTTGCTACTGATGTGGCTGCCCGAGGCTTGGACATAAAGGATATCAG                         AGTTGTGGTCAACTACGATTTCCCAACAGGTGTTGAGGATTACGTCCATAG
genomic: CTTGTTGCTACTGATGTGGCTGCCCGAGGCTTGGACATAAAGGATATCAGgttgggactt ... cctgttacagAGTTGTGGTCAACTACGATTTCCCAACAGGTGTTGAGGATTACGTCCATAG
EST: gi|38478160|gb|CF962293.1|CF962293
EST:     CTTGTTGCTACTGATGTGGCTGCCCGAGGCTTGGACATAAAGGATATCAG                         AGTTGTGGTCAACTACGATTTCCCAACAGGTGTTGAGGATTACGTCCATAG
genomic: CTTGTTGCTACTGATGTGGCTGCCCGAGGCTTGGACATAAAGGATATCAGgttgggactt ... cctgttacagAGTTGTGGTCAACTACGATTTCCCAACAGGTGTTGAGGATTACGTCCATAG
EST: gi|58667068|gb|CK055754.1|CK055754
EST:     CTTGTTGCTACTGATGTGGCTGCCCGAGGCTTGGACATAAAGGATATCAG                         AGTTGTGGTCAACTACGATTTCCCAACAGGTGTTGAGGATTACGTCCATAG
genomic: CTTGTTGCTACTGATGTGGCTGCCCGAGGCTTGGACATAAAGGATATCAGgttgggactt ... cctgttacagAGTTGTGGTCAACTACGATTTCCCAACAGGTGTTGAGGATTACGTCCATAG
EST: gi|66913147|gb|CX099995.1|CX099995
EST:     CTTGTTGCTACTGATGTGGCTGCCCGAGGCTTGGACATAAAGGATATCAG                         AGTTGTGGTCAACTACGATTTCCCAACAGGTGTTGAGGATTACGTCCATAG
genomic: CTTGTTGCTACTGATGTGGCTGCCCGAGGCTTGGACATAAAGGATATCAGgttgggactt ... cctgttacagAGTTGTGGTCAACTACGATTTCCCAACAGGTGTTGAGGATTACGTCCATAG