1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AAAGTTGCTGAAGTTATGTATGACCTAAAAGCTGCCAGCCAAGGTTCTTCTGAGCCAGATGCTGGCTGGTTGGATCTTTTCAGCAAACGCTATTGGAAAGgtagttttgttttctctgtttcagatctgactattttgattcctcaaattgcatcatgaaatcttccctgattgttatttcctactcttgtgttgctaaaataaaaacccaacatttaaccaaaacatcagtttggtgatttgttgctgacatattttttcataccgcag
species | Oryza sativa |
transcript | LOC_Os01g04190.3 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGAGCCAGATGCTGGCTGGTTGGATCTTTTCAGCAAACGCTATTGGAAAG TTGTTAGTGTGGGCGCA-CTATGTTCTTGTTCCAACAGCTTGCCGGTATAAEST: gi|58598313|gb|CK008841.1|CK008841
genomic: TGAGCCAGATGCTGGCTGGTTGGATCTTTTCAGCAAACGCTATTGGAAAGgtagttttgt ... cataccgcagTTGTTAGTGTGGGCGCAGCTATGTTCTTGTTCCAACAGCTTGCCGGTATAA
EST: TGAGCCAGATGCTGGCTGGTTGGATCTTTTCAGCAAACGCTATTGGAAAG TTGTTAGTGTGGGCGCAGCTATGTTCTTGTTCCAACAGCTTGCCGGTATAAEST: gi|55409376|gb|CV721752.1|CV721752
genomic: TGAGCCAGATGCTGGCTGGTTGGATCTTTTCAGCAAACGCTATTGGAAAGgtagttttgt ... cataccgcagTTGTTAGTGTGGGCGCAGCTATGTTCTTGTTCCAACAGCTTGCCGGTATAA
EST: TGAGCCAGATGCTGGCTGGTTGGATCTTTTCAGCAAACGCTATTGGAAAG TTGTTAGTGTGGGCGCAGCTATGTTCTTGTTCCAACAGCTTGCCGGTATAAEST: gi|27554385|gb|CA998285.1|CA998285
genomic: TGAGCCAGATGCTGGCTGGTTGGATCTTTTCAGCAAACGCTATTGGAAAGgtagttttgt ... cataccgcagTTGTTAGTGTGGGCGCAGCTATGTTCTTGTTCCAACAGCTTGCCGGTATAA
EST: TGAGCCAGATGCTGGCTGGTTGGATCTTTTCAGCAAACGCTATTGGAAAG TTGTTAGTGTGGGCGCAGCTATGTTCTTGTTCCAACAGCTTGCCGGTATAA
genomic: TGAGCCAGATGCTGGCTGGTTGGATCTTTTCAGCAAACGCTATTGGAAAGgtagttttgt ... cataccgcagTTGTTAGTGTGGGCGCAGCTATGTTCTTGTTCCAACAGCTTGCCGGTATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGTTGCTGAAGTTATGTATGACCTAAAAGCTGCCAGCCAAGGTTCTTCTGAGCCAGATGCTGGCTGGTTGGATCTTTTCAGCAAACGCTATTGGAAAGgtagttttgttttctctgtttcagatctgactattttgattcctcaaattgcatcatgaaatcttccctgattgttatttcctactcttgtgttgctaaaataaaaacccaacatttaaccaaaacatcagtttggtgatttgttgctgacatattttttcataccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG