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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtaccttctgtttttaggctgcatgcttgattctattcaacataacttggcctgtttttcttaatatcatgttatattgcttgtgcag

Basic information

species Oryza sativa
transcript LOC_Os12g42884.3
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g42884.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G149751_T06 (Zea mays), 5'ss of exon 6
GCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtaccttctgtttttaggctgcatgcttgattctattcaacataacttggcctgtttttcttaatatcatgttatattgcttgtgcag
|||||||| ||||||||  |||||||||||||||| ||||  || ||||| |||||||| || || |||||||| |||||||||||||||||      | |||||  |    | |  |     |    |  || |    | | |   |   || |  || ||  ||  | |||
GCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCCCGTGTGACCAATGAAGAAGTCCAGAAGGCTgtaagtaccttg---cctgaggcttaaaagctaacacatgctagtccagttttg---atgtgtaccagcctctttctacat-actgttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|300215517|gb|HO088143.1|HO088143
EST:     CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT                         GCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCTCT
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gcttgtgcagGCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: gi|218492493|gb|FG951515.1|FG951515
EST:     CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT                         GCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gcttgtgcagGCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: gi|300216253|gb|HO088038.1|HO088038
EST:     CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT                         GCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCTCT
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gcttgtgcagGCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: gi|11863315|gb|AU065792.2|AU065792
EST:     CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT                         GCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gcttgtgcagGCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: gi|29637650|gb|CB642659.1|CB642659
EST:     CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT                         GCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gcttgtgcagGCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: gi|29675799|gb|CB672074.1|CB672074
EST:     CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT                         GCTGCTGCTCTGAGGGGGTCTGACCACCGACGTGCTACC
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gcttgtgcagGCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACC
EST: gi|58613186|gb|CK040898.1|CK040898
EST:     CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT                         GCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gcttgtgcagGCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: gi|218483058|gb|FG951439.1|FG951439
EST:     CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT                         GCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gcttgtgcagGCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: gi|4968885|gb|AU065789.1|AU065789
EST:     CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT                         GCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gcttgtgcagGCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: gi|428283|gb|D24431.1|D24431
EST:     CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT                         GCTGCTGCTCTNAGGGGG
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gcttgtgcagGCTGCTGCTCTGAGGGGG
EST: gi|29615679|gb|CB620691.1|CB620691
EST:     CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT                         GCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCTCT
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gcttgtgcagGCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: gi|29635138|gb|CB640147.1|CB640147
EST:     CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT                         GCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTA
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gcttgtgcagGCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTA
EST: gi|33800724|gb|CF326232.1|CF326232
EST:     CCTCCAGGAGGTCATCACCTCGTGTTACAAACGAGGAAGTCCAAAAGGCT                         GCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
genomic: CCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gcttgtgcagGCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT
EST: gi|58661898|gb|CK050578.1|CK050578
EST:     CAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCT                         GCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCTCT
genomic: CAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTgtaagtacct ... gcttgtgcagGCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCT