1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGGAGATTTGGGATATGCGTCAGAGCTTGGAAATTATGCAGAATACAGCGGCGCTCCCAACGAGGAGGAGGTTCTGCAGTATGCTAGAGTGGTTTTGGATgtaagggctccagaggaaccttttcggctgacagtttgatcattatgtttccgctctgacaaaatgatatttgaatctttgtag
species | Oryza sativa |
transcript | LOC_Os12g37870.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CGCTCCCAACGAGGAGGAGGTTCTGCACTATGCTAGAGTGGTTTTTGGAT TGTGCCACTGCTGATCCTGATGGCCGTEST: gi|33807858|gb|CF329821.1|CF329821
genomic: CGCTCCCAACGAGGAGGAGGTTCTGCAGTATGCTAGAGTGGTTTT-GGATgtaagggctc ... atctttgtagTGTGCCACTGCTGATCCTGATGGCCGT
EST: GCGCTCCCAACGAGGAGGAGGTTCTGCAGTATGCTAGAGTGGTTTTGGAT TGTGCCACTGCTGATCCTGATGGCCGTAAGAGAGCTCTTCTCATTGEST: gi|88248192|gb|CI248041.1|CI248041
genomic: GCGCTCCCAACGAGGAGGAGGTTCTGCAGTATGCTAGAGTGGTTTTGGATgtaagggctc ... atctttgtagTGTGCCACTGCTGATCCTGATGGCCGTAAGAGAGCTCTTCTCATTG
EST: GAGGAGGTTCTGCAGTATGCTAGAGTGGTTTTGGAT TGTGCCACTGCTGATCCTGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGTEST: gi|88974793|gb|CI023089.1|CI023089
genomic: GAGGAGGTTCTGCAGTATGCTAGAGTGGTTTTGGATgtaagggctc ... atctttgtagTGTGCCACTGCTGATCCTGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGT
EST: GCGCTCCCAACGAGGAGGAGGTTCTGCAGTATGCTAGAGTGGTTTTGGAT TGTGCCACTGCTGATCCTGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGTEST: gi|33807860|gb|CF329822.1|CF329822
genomic: GCGCTCCCAACGAGGAGGAGGTTCTGCAGTATGCTAGAGTGGTTTTGGATgtaagggctc ... atctttgtagTGTGCCACTGCTGATCCTGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGT
EST: GCTCCCAACGAGGAGGAGGTTCTGCAGTATGCTAGAGTGGTTTTGGAT TGTGCCACTGCTGATCCTGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGTEST: gi|87021578|gb|CI275977.1|CI275977
genomic: GCTCCCAACGAGGAGGAGGTTCTGCAGTATGCTAGAGTGGTTTTGGATgtaagggctc ... atctttgtagTGTGCCACTGCTGATCCTGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGT
EST: AGTGGTTTTGGAT TGTGCCACTGCTGATCCTGATGCCCGTAAGAGAGCTCTTCTCATTGGAGGTEST: gi|29662348|gb|CB658623.1|CB658623
genomic: AGTGGTTTTGGATgtaagggctc ... atctttgtagTGTGCCACTGCTGATCCTGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGT
EST: GCGCTCCCAACGAGGAGGAGGTTTTGCAGTATGCTAGAGTGGTTTTGGAT TGTGCCACTGCTGATCCTGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGTEST: gi|29680113|gb|CB676388.1|CB676388
genomic: GCGCTCCCAACGAGGAGGAGGTTCTGCAGTATGCTAGAGTGGTTTTGGATgtaagggctc ... atctttgtagTGTGCCACTGCTGATCCTGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGT
EST: GCGCTCCCAACGAGGAGGAGGTTCTGCAGTATGCTAGAGTGGTTTTGGAT TGTGCCACTGCTGATCCTGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGTEST: gi|29638061|gb|CB643070.1|CB643070
genomic: GCGCTCCCAACGAGGAGGAGGTTCTGCAGTATGCTAGAGTGGTTTTGGATgtaagggctc ... atctttgtagTGTGCCACTGCTGATCCTGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGT
EST: GCGCTCCCAACGAGGAGGAGGTTCTGCAGTATGCTAGAGTGGTTTTGGAT TGTGCCACTGCTGATCCTGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGTEST: gi|29669994|gb|CB666269.1|CB666269
genomic: GCGCTCCCAACGAGGAGGAGGTTCTGCAGTATGCTAGAGTGGTTTTGGATgtaagggctc ... atctttgtagTGTGCCACTGCTGATCCTGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGT
EST: GCGCTCCCAACGAGGAGGAGGTTTTGCAGTATGCTAGAGTGGTTTTGGAT TGTGCCCCTGCTGATCCTGATGGCCGTAAGAGAGCTCTTTTCATTGGAGGTEST: gi|88248053|gb|CI246671.1|CI246671
genomic: GCGCTCCCAACGAGGAGGAGGTTCTGCAGTATGCTAGAGTGGTTTTGGATgtaagggctc ... atctttgtagTGTGCCACTGCTGATCCTGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGT
EST: AGGTTCTGCAGTATGCTAGAGTGGTTTTGGAT TGTGCCACTGCTGATCCTGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGTEST: gi|86908638|gb|CI318965.1|CI318965
genomic: AGGTTCTGCAGTATGCTAGAGTGGTTTTGGATgtaagggctc ... atctttgtagTGTGCCACTGCTGATCCTGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGT
EST: AGAGTGGTTTTGGAT T-TCCCACTGCTGATCCTGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGT
genomic: AGAGTGGTTTTGGATgtaagggctc ... atctttgtagTGTGCCACTGCTGATCCTGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGATTTGGGATATGCGTCAGAGCTTGGAAATTATGCAGAATACAGCGGCGCTCCCAACGAGGAGGAGGTTCTGCAGTATGCTAGAGTGGTTTTGGATgtaagggctccagaggaaccttttcggctgacagtttgatcattatgtttccgctctgacaaaatgatatttgaatctttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG