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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGGATTATTGGgtaagaaaataaaagacacatttggtcacataggaggaccgatattaggtgggcttgtgggactgaagaagccgaacaaccatggcgtaccttattctttgactgaagagtttaccagtgtttacag

Basic information

species Oryza sativa
transcript LOC_Os12g26290.6
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g26290.6 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM5G818450_T01 (Zea mays), 5'ss of exon 3
-----------------------------GTATGGATTATTGGgt--aagaaaataaaagacacatttggtcacataggaggaccgatattaggtgggcttgtgggactgaagaagccgaacaaccatggcgtaccttattct---ttgactgaagagtttaccagtgtttacag----------------------------
                             | ||| | | ||  |   | | |    |  |||  |   | |  || |  |   || |   ||  ||     ||| |  |  | ||     | |    |||| | | ||  |||   ||   || ||| || |      |  | |                             
TTTGACTGAAGAGTTTACCAGTGTTTACAGAATGCACTCTTAAGCTCAGGGATCCGACCGACCAACCCGAT-GCAAATAATTCCCCACCGTACCTGAAAGAgtgag--tagacaatttatatatgtttggcatccattcctctcatttttatgtagaattaaatcagatagaaaagagtgatacagattataaagaattgaac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29673790|gb|CB670065.1|CB670065
EST:     CGCGCAAATTGGTATGGATTATTGG                         AATGCACTCCCTAATACCAAGCACTCTCAAGCTCAGGGATCCGACAGGGCA
genomic: CGCGCAAATTGGTATGGATTATTGGgtaagaaaat ... gtgtttacagAATGCACTCCCTAATACCAAGCACTCTCAAGCTCAGGGATCCGACAGGGCA