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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCTCAGACTGCATGCCACGGAAACTACTGGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACGgtaataaaccgccgtgttacttcatctgattaaagatatcattgaatcaacgctgttctccttatgatataccttgttcttgtgcag

Basic information

species Oryza sativa
transcript LOC_Os12g15470.3
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29659836|gb|CB656111.1|CB656111
EST:     GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACG                         TCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGC
genomic: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACGgtaataaacc ... tcttgtgcagTCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGC
EST: gi|117240321|gb|CT842747.1|CT842747
EST:     GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACG                         TCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGC
genomic: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACGgtaataaacc ... tcttgtgcagTCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGC
EST: gi|29668081|gb|CB664356.1|CB664356
EST:     GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACG                         TCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGC
genomic: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACGgtaataaacc ... tcttgtgcagTCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGC
EST: gi|33801783|gb|CF326764.1|CF326764
EST:     GGAATACTACCACTGATAAATGTGAAAATGCACTCTACANAGTCGATACG                         TCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGC
genomic: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACGgtaataaacc ... tcttgtgcagTCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGC
EST: gi|88399116|gb|CI603783.1|CI603783
EST:     GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACG                         TCAATTAATGACCTAA
genomic: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACGgtaataaacc ... tcttgtgcagTCAATTAATGACCTAA
EST: gi|86905526|gb|CI285489.1|CI285489
EST:     GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACG                         TCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGC
genomic: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACGgtaataaacc ... tcttgtgcagTCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGC
EST: gi|4715276|gb|AU056393.1|AU056393
EST:     GAATACTACCACTGGATAAATGTGAAAATGCACTCTACAAAGTCGATACG                         TCAATTAATGA
genomic: GAATACTACCACTG-ATAAATGTGAAAATGCACTCTACAAAGTCGATACGgtaataaacc ... tcttgtgcagTCAATTAATGA