1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGTTACAAATCCCTTCGGTACTCTGCCAGCAATGCCTCAGATGTCCATTGGGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCAgttagtattattactgtcttaactattttgattgttaaagtagagtgcatgagcacctgagcttactatagaaggattgttagcaagtttgtctgctgattgagatacaagaaaagtgcatagcagattgagacattctactcttttgcag
species | Oryza sativa |
transcript | LOC_Os12g06890.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCA GTTGCTGATAAGCCTCTTACGAACAGAACATCATTATCCATGGTGGTTCCTEST: gi|58680968|gb|CK069655.1|CK069655
genomic: GCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCAgttagtatta ... tcttttgcagGTTGCTGATAAGCCTCTTACGAACAGGACATCATTATCCATGGTGGTTCCT
EST: GGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCA GTTGCTGATAAGCCTCTTACGAACAGAACATCATTATCCATGGTGGTGCCTEST: gi|33678464|gb|CF306703.1|CF306703
genomic: GGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCAgttagtatta ... tcttttgcagGTTGCTGATAAGCCTCTTACGAACAGGACATCATTATCCATGGTGGTTCCT
EST: GGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCA GTTGCTGATAAGCCTCTTACGAACAGGACATCATTATCCATGGTGGTTCCTEST: gi|218497860|gb|FG958963.1|FG958963
genomic: GGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCAgttagtatta ... tcttttgcagGTTGCTGATAAGCCTCTTACGAACAGGACATCATTATCCATGGTGGTTCCT
EST: GGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCA GTTGCTGATAAGCCTCTTACGAACAGAACATCATTATCCATGGTGGTTCCTEST: gi|33794845|gb|CF323302.1|CF323302
genomic: GGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCAgttagtatta ... tcttttgcagGTTGCTGATAAGCCTCTTACGAACAGGACATCATTATCCATGGTGGTTCCT
EST: GGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCA GTTGCTGATAAGCCTCTTACGAACAGGACATCATTATCCATGGGTGGTTCCEST: gi|58676341|gb|CK065028.1|CK065028
genomic: GGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCAgttagtatta ... tcttttgcagGTTGCTGATAAGCCTCTTACGAACAGGACATCATTATCCATGG-TGGTTCC
EST: GGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCA GTTGCTGATAAGCCTCTTACGAACAGAACATCATTATCCATGGTGGTTCCT
genomic: GGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCAgttagtatta ... tcttttgcagGTTGCTGATAAGCCTCTTACGAACAGGACATCATTATCCATGGTGGTTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTACAAATCCCTTCGGTACTCTGCCAGCAATGCCTCAGATGTCCATTGGGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCAgttagtattattactgtcttaactattttgattgttaaagtagagtgcatgagcacctgagcttactatagaaggattgttagcaagtttgtctgctgattgagatacaagaaaagtgcatagcagattgagacattctactcttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA