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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTGTCTTTCAGGCTCATCTGATTCAATGATAAGgtaattcacagttctagtcttgcccactccagatcttgtgtatgtgtgtatgcacactaaaatatctgtactttcacactgatcatgaagtcatgtaacatcttgtctgcacatgtttctggattttgcag

Basic information

species Oryza sativa
transcript LOC_Os12g06810.4
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29678630|gb|CB674905.1|CB674905
EST:     GTATTGTCTTTCAGGCTCATCTGATTCAATGATAAG                         ATTATGGGATCTGGGACAGCAGCGATGTATTCATTCTTATGCTGTGCATAC
genomic: GTATTGTCTTTCAGGCTCATCTGATTCAATGATAAGgtaattcaca ... gattttgcagATTATGGGATCTGGGACAGCAGCGATGTATTCATTCTTATGCTGTGCATAC
EST: gi|29670913|gb|CB667188.1|CB667188
EST:     GTATTGTCTTTCAGGCTCATCTGATTCAATGATAAG                         ATTATGGGATCTGGGACAGCAGCGATGTATTCATTCTTATGCTGTGCATAC
genomic: GTATTGTCTTTCAGGCTCATCTGATTCAATGATAAGgtaattcaca ... gattttgcagATTATGGGATCTGGGACAGCAGCGATGTATTCATTCTTATGCTGTGCATAC